Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02191 and BPUM_2474
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_02191___ykgB.1.24716.seq
# -bsequence dna-align/BPUM_2474.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02191___ykgB-BPUM_2474.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02191___ykgB-BPUM_2474.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02191___ykgB
# 2: BPUM_2474
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1164
# Identity: 701/1164 (60.2%)
# Similarity: 701/1164 (60.2%)
# Gaps: 234/1164 (20.1%)
# Score: 1845.0
#
#
#=======================================
BSNT_02191___ 1 ATGAC-AAAATACATAGGATATGTGGGAACATATACAAAAGGCGGAAGCG 49
|||.| ||.|| ||.|||.|||.|.|||||.||||||||.||.|..||..
BPUM_2474 1 ATGGCTAACAT-CAGAGGTTATATCGGAACGTATACAAAGGGAGACAGTA 49
BSNT_02191___ 50 AAGGAATTTATTCATTTGAGCTT-GATACTGAGAAAAAAGCACTCAGC-- 96
||||.||||||.| |||.|..|| .||||.|| ||..||||
BPUM_2474 50 AAGGCATTTATAC-TTTTACATTAAATACGGA--------CAAGCAGCAG 90
BSNT_02191___ 97 ---GAGCCA----AAGCTGGCCGCTAAGCTGGGCAACCCGACATATGT-- 137
||||.| ||| |.||.|||.|.||.|..||.||.||||||.|
BPUM_2474 91 ATTGAGCAAGTAGAAG-TAGCTGCTGAACTTGAAAATCCTACATATTTAA 139
BSNT_02191___ 138 --GGCGCCGAAT---AAAAACAACACCATCCTT----TATTCCATCGAAA 178
|.|.|.||.| ||||| || |||.|..|.|..|
BPUM_2474 140 CCGTCTCAGATTCTCAAAAA-----------TTTGTGTATGCTGTGGTGA 178
BSNT_02191___ 179 AAGCAG----ACGGCCAAGGCGGAGTTGCTGCCTATCAAATCGAT--AAA 222
|||.|| | ||.|||||.||.|||||.|||||||||||| |.|
BPUM_2474 179 AAGAAGGATCA----CAGGGCGGCGTGGCTGCTTATCAAATCGATGCAGA 224
BSNT_02191___ 223 AACAGCGGCGAATTGACATTTCTGAATCATCAGTTAA----TT---GATG 265
||| |||| |||.||| |..||||||...|| || ||.|
BPUM_2474 225 AAC--CGGC------ACACTTC-GTTTCATCAACCAAGAACTTGCCGAAG 265
BSNT_02191___ 266 GCCCTTCGCCATGCCACGTAAGCGTTGATGATCAAAATCAA-------TT 308
||.||||.||.||.|||||.|||||.||...||||| ||| ||
BPUM_2474 266 GCGCTTCTCCTTGTCACGTCAGCGTGGACAGTCAAA--CAAAAACAGCTT 313
BSNT_02191___ 309 CGTACTGACTGCCAATTATCACAGCGGGAAGGTACACGTTTTTCCGGTTC 358
|.||.||.||.|||||.| ||||.||| .|
BPUM_2474 314 -----TTACAGCAAACTATCATA-----AAGGAACA------------GC 341
BSNT_02191___ 359 AGGAAGACGGCAGCT-TGCAATC--------ACCTGTTTCAGAG-GCCGC 398
|| |||.| | ||.|||| |..||..||||.| .||||
BPUM_2474 342 AG--AGATG-----TATGAAATCGATGCTGAAAATGGCTCAGTGATCCGC 384
BSNT_02191___ 399 ------TCACA-----------CAGGAAAAGGGCCGCACGAAAGA----C 427
||||| .|||||..||.||..||| |||| |
BPUM_2474 385 ACGCTGTCACAGGCGCAGCATGAAGGAACTGGCCCTAACG-AAGATCGTC 433
BSNT_02191___ 428 AAGAAAAACCGCATACACACTACGCGGGGTTCACACC---TGAACACAAT 474
|.||.||||||||.||.||||....|||..|.||||| ||| |||||
BPUM_2474 434 AGGAGAAACCGCACACTCACTTTATGGGTCTGACACCAGATGA--ACAAT 481
BSNT_02191___ 475 TATGTGGTAGCGGTTGATTTAGGTATAGATAAGC-TCTACACCTATAAGC 523
| ||..|||||.|||||..|.||.|.|||| .|| |.||.||.|||||
BPUM_2474 482 T-TGCAGTAGCTGTTGACCTTGGGACAGAT-GGCATTTATACGTATAA-- 527
BSNT_02191___ 524 TGAAAG---ACGGTGTGTTGACTGAATCCGGAAGC-CATTCCTTCG---- 565
||||| ||| |...|||..||| .||| |||.|.||.|
BPUM_2474 528 -GAAAGAAAACG----GCAAACTTGATC---TAGCTCATACATTTGAAAC 569
BSNT_02191___ 566 --CTCCCGGTGCAGGACCTCGCCATATCGCTTTTCATCCGAAAGAAAAAT 613
..||.||..|.||.||||||||||||.|.||.||||| ||.|||
BPUM_2474 570 AAAACCAGGCACCGGGCCTCGCCATATCACATTCCATCC-AACGAA---- 614
BSNT_02191___ 614 AC-----GCTTATGTCATGACAGAATTAAGCAATGAAGTGATTGCGCTTG 658
|| ||.|||||.||||||||..|||||...||.|||||||.||||.
BPUM_2474 615 ACCTGTGGCATATGTGATGACAGAGCTAAGCTCAGAGGTGATTGTGCTTC 664
BSNT_02191___ 659 AATAC----AACCCGACAGCCGGCGAATTTAG-AGAAATCCAA---GTCG 700
..||| || ||..|.| ||||.| |||.||.||| .|||
BPUM_2474 665 GTTACTTTGAA---GATGGTC-----ATTTCGAAGAGATTCAAACGATCG 706
BSNT_02191___ 701 TTTCTGCCATCCCTGATGATTTTACAGATAACAGCCAGGGAAGCGCAATA 750
|..||||.||..||||.||||||||.||||.|||.||.||.||.||.
BPUM_2474 707 ---CAACCATTCCAAATGACTTTACAGAGAACAACCAAGGTAGTGCCATC 753
BSNT_02191___ 751 CATGTCAC-GCAGGACGGACGTTTTGTTTATGTCGCAAACCGCGGCCATG 799
||||||.| .|| |||||.|..||||||||||..|.|||.||.||.||||
BPUM_2474 754 CATGTCTCTTCA-GACGGCCAATTTGTTTATGCAGGAAATCGTGGACATG 802
BSNT_02191___ 800 ACAGTATCGCCGTATTTGAAG-------TGA--ATCAATATTCAGGAGAG 840
||||.||.||..|.|||.||| ||| .||| |||.|
BPUM_2474 803 ACAGCATTGCGATTTTTAAAGCAGATGCTGACGGTCA--ATTAA------ 844
BSNT_02191___ 841 CTGGCTT-TCGTAGAAAGAGTG--TCGACAGAAGGAAACTGGCCTCGTGA 887
|.||| ||| |||.|| ||..|.|||||||||||||||.|.||
BPUM_2474 845 --GTCTTGTCG-----AGATTGCTTCTTCTGAAGGAAACTGGCCTAGAGA 887
BSNT_02191___ 888 TTTTGTATTTGACCCAACGGAAGGGTTCCTCGTTGCTTCAAATGAAGAAA 937
.|||||..||||||||||.||||..||||||||.|.||||||..|||||.
BPUM_2474 888 CTTTGTGCTTGACCCAACTGAAGAATTCCTCGTCGGTTCAAACCAAGAAT 937
BSNT_02191___ 938 CAGGCAACCTTGTCTTGTTTGAAAGAGACAAAGAAACCGGCCGATTGACA 987
|..|||||||.||.||.|...||.|.|||||||||||.||..||.|.||.
BPUM_2474 938 CTAGCAACCTAGTGTTATACAAACGCGACAAAGAAACAGGAAGACTCACT 987
BSNT_02191___ 988 CTCCTCCCATCA-ACGGTTTCTGTCCCTTACCCGGTTTGTGTAAAGTTTT 1036
.||.|.|.|||| || .|.||.||.|||.|.||.|||||.||.||.||||
BPUM_2474 988 GTCTTACAATCAGAC-ATCTCAGTGCCTCATCCAGTTTGCGTGAAATTTT 1036
BSNT_02191___ 1037 TACATCAAGTATAA 1050
| ||.||||
BPUM_2474 1037 T------AGGATAA 1044
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