Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05892 and BPUM_2478

See Amino acid alignment / Visit BSNT_05892 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_05892___dltB.1.24716.seq
#    -bsequence dna-align/BPUM_2478___dltB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05892___dltB-BPUM_2478___dltB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05892___dltB-BPUM_2478___dltB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05892___dltB
# 2: BPUM_2478___dltB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1261
# Identity:     867/1261 (68.8%)
# Similarity:   867/1261 (68.8%)
# Gaps:         149/1261 (11.8%)
# Score: 2900.5
# 
#
#=======================================

BSNT_05892___      1 ATGACGCCTTACAGCTCGTTTTTATTCTTTATACTGCTTGGCATTCTTCT     50
                     ||||..||.|..||.||.||.||.|||||.||.||..||||..|||||||
BPUM_2478___d      1 ATGATTCCGTTTAGTTCATTCTTTTTCTTCATTCTAATTGGTGTTCTTCT     50

BSNT_05892___     51 TCTGCCGACGATCATTCTCGGCTTAAACGGAAAAAGATTTCAAGCATACA    100
                     |.||||||||||||||||.||..||..|||.|||.||.|.||.|..||||
BPUM_2478___d     51 TTTGCCGACGATCATTCTTGGTCTACGCGGCAAACGAATGCAGGGCTACA    100

BSNT_05892___    101 ACATGTT--CATATCTATCATTATA---TTG----------GCTTTAATT    135
                     |||||||  ||             |   |||          ||||  |||
BPUM_2478___d    101 ACATGTTTGCA-------------ACGGTTGTGGCACTCGCGCTT--ATT    135

BSNT_05892___    136 TTTTCGCACGACTTACACGGGGTCATCGCGCTG------TGCCTGTTTAC    179
                     ||.||..|.||...|||.||      |||||||      |.|.|||||||
BPUM_2478___d    136 TTCTCAAAGGATGCACATGG------CGCGCTGCTGCTCTTCTTGTTTAC    179

BSNT_05892___    180 AATATGGCAGGTGCTCCTGATCAGCGGC---TATCTGGCATACCGGCAGA    226
                     |.|.|||||.|   ||.||||||.|.||   ||.||..|.||||||..||
BPUM_2478___d    180 AGTTTGGCAAG---TCTTGATCATCCGCCTGTACCTTTCGTACCGGTTGA    226

BSNT_05892___    227 AAGCGA--ACAGCGGCTTTGTCTTTTGCGGGGCTGTTATCGCGTCTATTC    274
                     ||||||  |.||||  |.||||||.|....|||.||..|.||.||.|||.
BPUM_2478___d    227 AAGCGAATAAAGCG--TCTGTCTTCTATATGGCAGTGGTGGCATCGATTT    274

BSNT_05892___    275 TGCCTTTATTTCTGTCAAAAATATGGCCGTT-TCTGTCACACCCGCAGCC    323
                     ||||..|..|.||.|||||..|.|..||||| |.|.|.|| .|..|||||
BPUM_2478___d    275 TGCCACTTGTACTCTCAAAGGTTTTACCGTTCTTTTTAAC-TCATCAGCC    323

BSNT_05892___    324 GCATCATCCGCCGC--AT-AACCTGATCAGCTTTTTAGGGATTTCATATT    370
                     ||||||.|||||||  || |||..|.|.||||||||||||||.||.||.|
BPUM_2478___d    324 GCATCAACCGCCGCCAATGAACTGGCTGAGCTTTTTAGGGATCTCGTACT    373

BSNT_05892___    371 TAACCTTTAAAGGCGTTCAGCTGATTATGGAAGCAAGAGACGGACTGCTG    420
                     ||||.||||||||.||||||.|..||||.||..|||||||.||..||.|.
BPUM_2478___d    374 TAACATTTAAAGGTGTTCAGTTAGTTATCGAGACAAGAGATGGCTTGATT    423

BSNT_05892___    421 A--AAGAACAGCTGCC-ATTGCACCGCCTGCTGTATTTCATCCTGTTTTT    467
                     |  |||||.|  |.|| ||| |||||..||.|.||||||||..|.|||||
BPUM_2478___d    424 AAGAAGAAAA--TTCCGATT-CACCGTTTGGTCTATTTCATTGTCTTTTT    470

BSNT_05892___    468 CCCGACGATTTCCTCCGGCCCGATCGACAGATACCGCCGGTTCGTCAAGG    517
                     ||||||||||||.||.||.||.||.||..|.|||||||||||.|..||||
BPUM_2478___d    471 CCCGACGATTTCATCAGGTCCAATTGATCGTTACCGCCGGTTTGAAAAGG    520

BSNT_05892___    518 ATGAACAGAAGGCTTGGACG------AAAGAAGAATACGCCGACCTGTTG    561
                     ||      |.||.|..|.||      ||.||||.||||...||  |.||.
BPUM_2478___d    521 AT------ATGGATACGCCGCCTGAAAAGGAAGCATACAGTGA--TCTTT    562

BSNT_05892___    562 TATACG--GGAATCCATAAAATCTTCATCGGTTTCCTGTATAAATTTATT    609
                     ||||||  ||..|.||||||||.||.|||||.|||.|.|||||.||.|||
BPUM_2478___d    563 TATACGCCGGTGTTCATAAAATTTTTATCGGCTTCTTATATAAGTTCATT    612

BSNT_05892___    610 ATCGG----CTACGCGATCAATACGTA-CTTCATCATGAATCTTCCCGCA    654
                     ||.||    |||    ||.||.||||| .||| |.|.||||.|||     
BPUM_2478___d    613 ATAGGTTATCTA----ATTAACACGTATATTC-TAACGAATATTC-----    652

BSNT_05892___    655 ATCAC-------GCA--CAATAAGATTCTT-----GGGAACCTGCTGTAC    690
                     |||||       |||  ||||    ||.||     |..|||     |||.
BPUM_2478___d    653 ATCACTTTAGCAGCAGTCAAT----TTGTTCAACAGTTAAC-----GTAT    693

BSNT_05892___    691 ATGTACGGCTACAGCATGTATTTATTCTTTGATTTCGCCGGCTACACGAT    740
                     |||||.|..|||||.||||||||.||||||||.||.||.|||||.||...
BPUM_2478___d    694 ATGTATGCGTACAGTATGTATTTGTTCTTTGACTTTGCTGGCTATACAGC    743

BSNT_05892___    741 GTTTGCCGTCGGGGTCAGCTACATTATGGGCATTAAATCACCGGAAAACT    790
                     .|||||.||.||.||.||.||.||.|||||||||||||||||.|||||||
BPUM_2478___d    744 ATTTGCTGTTGGTGTGAGTTATATCATGGGCATTAAATCACCAGAAAACT    793

BSNT_05892___    791 TTAATAAACCATTTATCAGTAAAAATATTAAAGATTTCTGGAATCGCTGG    840
                     ||||.|||||.|||||||||...|||||||||||.|||||||||||||||
BPUM_2478___d    794 TTAACAAACCGTTTATCAGTCGGAATATTAAAGACTTCTGGAATCGCTGG    843

BSNT_05892___    841 CATATGTCTCTGTCATTTTGGTTCAGAGATTATGTGTTTATGAGATTCGT    890
                     ||.|||||.|||||.||.|||||||||||.||.||||||||||||||.||
BPUM_2478___d    844 CACATGTCCCTGTCCTTCTGGTTCAGAGACTACGTGTTTATGAGATTTGT    893

BSNT_05892___    891 ATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAA    940
                     .||.|..|||||.||.||.|||||||||||.|||||||||||.||.||||
BPUM_2478___d    894 GTTCTTTATGACAAAAAAGAAGTGGATCAAGAACCGTATGGCTGTATCAA    943

BSNT_05892___    941 ACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTT    990
                     |.||.|||||.||..|.||.|||.|..|||||||.|.||||||.||.||.
BPUM_2478___d    944 ATATTGGGTACTTTGTCCTCTTTCTATTGATGGGTGCTTGGCATGGTCTC    993

BSNT_05892___    991 GCGCCGCAATATATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTG   1040
                     ||.|..||||||||.||||||||.||.||||||||.|||.|||||.|..|
BPUM_2478___d    994 GCCCTTCAATATATTATTTACGGACTATATCACGCAGTTGTGATGTCCGG   1043

BSNT_05892___   1041 TTACAA-CTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCC----   1085
                     |||||| ||.||| |||||.||||||||.|||.|.||.|||..|||    
BPUM_2478___d   1044 TTACAATCTATTT-GAGAAATGGAATAAAAAACACAAGTGGTGGCCGGAT   1092

BSNT_05892___   1086 ------GTC-CAACCGCTG-GACAACCATTCTCGCTATTGTGATCACATT   1127
                           ||| |||..|.|| |.|||.||||            ||.|||||
BPUM_2478___d   1093 AACAAGGTCACAATGGTTGTGTCAATCATT------------ATTACATT   1130

BSNT_05892___   1128 CCATTTCGTTTGCTTCGGGTTTTATATTTTCTCAGGAAAACCATTTCATC   1177
                     ||||.|..||||.|||||.|||||||||||.|||||||||||||||||| 
BPUM_2478___d   1131 CCATGTGATTTGTTTCGGATTTTATATTTTTTCAGGAAAACCATTTCAT-   1179

BSNT_05892___   1178 ACCACCATTAA   1188
                          ||||||
BPUM_2478___d   1180 -----CATTAA   1185


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