Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_06021 and BPUM_2488

See Amino acid alignment / Visit BSNT_06021 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:35
# Commandline: needle
#    -asequence dna-align/BSNT_06021___gdh.1.24716.seq
#    -bsequence dna-align/BPUM_2488.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06021___gdh-BPUM_2488.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06021___gdh-BPUM_2488.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06021___gdh
# 2: BPUM_2488
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1106
# Identity:     482/1106 (43.6%)
# Similarity:   482/1106 (43.6%)
# Gaps:         487/1106 (44.0%)
# Score: 727.0
# 
#
#=======================================

BSNT_06021___      1 ATGATGAAGAAAAAGAATATAATGA---TAACTGGGGCAA-ATAGCGGAA     46
                        ||||  .|.||||||.|.||||   |||  |..|||| |      ||
BPUM_2488          1 ---ATGA--CACAAGAATCTGATGAGCGTAA--GTTGCAACA------AA     37

BSNT_06021___     47 TCGGCTTTGCGGCGGTAAAGCAATTTCTAACAGAAGGCTTTCGAGTCGTT     96
                     ||               ||.|||.|.| ||||||.|  ||||       |
BPUM_2488         38 TC---------------AAACAAATGC-AACAGATG--TTTC-------T     62

BSNT_06021___     97 GGAG----TGGATATTCAA----------------------ACGAATAAA    120
                     .|||    ||.|.|.||||                      |||.|.|||
BPUM_2488         63 AGAGAAAATGAAAACTCAACCTTATCCCATGTACCCTAATTACGGAAAAA    112

BSNT_06021___    121 ATGTCAGAATTTAT--AGTAAA---CAGTGAGTTTCACATGGAAAAAG-C    164
                        |||.|...|||  || |||   ||.|.|.||| ||.||.|.||.| |
BPUM_2488        113 ---TCACACGCTATGAAG-AAATTCCAATTAATTT-ACCTGAACAACGTC    157

BSNT_06021___    165 AGACTT-GT----CTGATGTCCGGCAGGCGGAATCTTTGATGCTAAAAC-    208
                     | |||| ||    |||.|||         .|||..|||.|||.||..|| 
BPUM_2488        158 A-ACTTCGTCATCCTGGTGT---------AGAAGGTTTAATGGTACCACT    197

BSNT_06021___    209 --------TTGAAAA--------------------------AAGCCGG--    222
                             |||||||                          .|||.||  
BPUM_2488        198 TCCAATTATTGAAAATACAAATTACAAAGGGAGTGGTAAGTTAGCGGGAA    247

BSNT_06021___    223 --------CTGATCCC------GGATA----TTTTGATCAATGCAGC---    251
                             ||.||..|      |||||    |.|||    .||||||   
BPUM_2488        248 AAGTTGCTCTTATTACAGGAGGGGATAGTGGTATTG----GTGCAGCCGT    293

BSNT_06021___    252 AGGGAT---------AAGGGAAA----TTACCCCTGTT---CTTGAATTA    285
                     ||..||         ||.|||||    |.||    |||   .|||.||..
BPUM_2488        294 AGCTATCGCCTTCGCAAAGGAAAGTGCTGAC----GTTGCGATTGCATAC    339

BSNT_06021___    286 TCAGCAGAATCATTC-AAAAAGGTCATAGA-------CATTAATCTCA--    325
                     |.||..||| ||  | ||.|.|.|.|||||       ||..||||..|  
BPUM_2488        340 TTAGATGAA-CA--CGAAGATGCTAATAGAACAAAAGCAAGAATCGAAGA    386

BSNT_06021___    326 ----CGGCAGC---CTTTATTCTTTCC----------CGAGAT--GCGGC    356
                         .||||.|   .||||||..|.||          ||||||  ..|||
BPUM_2488        387 ACTTGGGCAACGTTGTTTATTGATGCCAGGAGACTTGCGAGATAAAAGGC    436

BSNT_06021___    357 AAGG--------CTGTGGTCAAAGCTGGGAAAAC-------------GAG    385
                     ||.|        .|||.|..|||.|....|||||             ||.
BPUM_2488        437 AATGTATCACCATTGTAGAGAAAACAATAAAAACCTTCGGGCGTCTAGAC    486

BSNT_06021___    386 GCTGTAT------------------AA--TCAACATC---GCCT------    406
                     |.|.|||                  ||  ||||||.|   ||||      
BPUM_2488        487 GTTCTATGTAACCACGTTGGTATCCAATTTCAACAACCAAGCCTTCTTAA    536

BSNT_06021___    407 CTGTGTC--CG-------GGCTGA--------------------------    421
                     |..|.||  ||       .|.|||                          
BPUM_2488        537 CATTATCGACGAACAATTCGATGACACCTTTAAAGTCAACATTTACTCAC    586

BSNT_06021___    422 ----TGGCAGAGCCTGCGC-GGGCTGCCTATGTGT-CTT----CCAAGCA    461
                         |..||.|.||.|.|| |.|||.|||     | |||    |||.|||
BPUM_2488        587 ATTTTTACACAACCAGAGCAGCGCTTCCT-----TACTTAAAACCAGGCA    631

BSNT_06021___    462 -TGCGATCATCGG-ACT------GACG-AAGCAGCTCGCTATGGAGTTCG    502
                      |.|.||.||||| |||      |.|| ||      || ||||.||.|  
BPUM_2488        632 GTTCTATTATCGGCACTTCTTCAGTCGTAA------CG-TATGTAGGT--    672

BSNT_06021___    503 GATCAA-AGGGGATCAGGGTGAATA----------------GCATTT---    532
                     ||.||| |...|||     |||.||                |||.||   
BPUM_2488        673 GAGCAACAAATGAT-----TGATTATACCGCCACAAAAGGTGCAATTGTT    717

BSNT_06021___    533 -------CACCGGGCGTGAT----CCAAACAGAAT----TAACGGAAGAG    567
                            ||     ||||.|    |.|||   |||    |||...||| |
BPUM_2488        718 GGTTGGACA-----CGTGCTTTGGCTAAA---AATGTTGTAAAACAAG-G    758

BSNT_06021___    568 TATTTTCAAGACGATG-AAATG--GTT-CAGCTGATCAAA----GATAAC    609
                     .|||       || || |||||  ||| |..|||.||.||    || .||
BPUM_2488        759 AATT-------CG-TGTAAATGCCGTTGCTCCTGGTCGAATCTGGA-CAC    799

BSNT_06021___    610 CA-----TGC-----CCTTCATACGTGGGGGCAG-CCGAGTG-----ATA    643
                     ||     |||     .||||  .|||     ||| ||.||||     |||
BPUM_2488        800 CACTCATTGCAGCAAGCTTC--TCGT-----CAGACCAAGTGGGTGTATA    842

BSNT_06021___    644 TCG-----TT--TCC------------TG--------TATGAAGT-----    661
                     |.|     ||  |||            ||        |.||||.|     
BPUM_2488        843 TGGAGCATTTAATCCAATGGAACGAGTTGCCCATCCATTTGAACTCGCAC    892

BSNT_06021___    662 ----ATTTG--------GCTTCTGATGAGGCGCACTTTATTACAGGTTCA    699
                         |||||        |||||||||||..|.|..|||.||||||| |||
BPUM_2488        893 CAACATTTGTTTATCTTGCTTCTGATGATTCTCGTTTTGTTACAGG-TCA    941

BSNT_06021___    700 AACTTTGTCATAGACGGCGGC---TGGACGGCCGGCAAGAAACTA-----    741
                     |     ||        ||.||   |.||||||.||   |||.|.|     
BPUM_2488        942 A-----GT--------GCTGCATGTTGACGGCGGG---GAATCCACACAT    975

BSNT_06021___    742 ---TAA    744
                        |||
BPUM_2488        976 TCCTAA    981


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.