Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04168 and BPUM_2513
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:41
# Commandline: needle
# -asequence dna-align/BSNT_04168___lcfA.1.24716.seq
# -bsequence dna-align/BPUM_2513___lcfA2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04168___lcfA-BPUM_2513___lcfA2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04168___lcfA-BPUM_2513___lcfA2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04168___lcfA
# 2: BPUM_2513___lcfA2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1799
# Identity: 1205/1799 (67.0%)
# Similarity: 1205/1799 (67.0%)
# Gaps: 193/1799 (10.7%)
# Score: 3643.0
#
#
#=======================================
BSNT_04168___ 1 ATGCAGTCTCAAAAGCCGTGGCT--TGCCGAGTATCCCAACGATATCCCG 48
||||||||..|.||.|..||||| ||| |.||.||.||..|.||.||.
BPUM_2513___l 1 ATGCAGTCAGATAAACGTTGGCTTCTGC--ATTACCCGAATCAAATTCCC 48
BSNT_04168___ 49 CATGAGCTTCCGTTGCCGAATAAAACCCTGCAATCCATCCTGA--CAGAC 96
||.||.||..|..|.||.|||.||||..|||||| |.|.||.| ||| |
BPUM_2513___l 49 CACGAACTCACCATCCCAAATGAAACATTGCAAT-CTTACTTATTCAG-C 96
BSNT_04168___ 97 TCCGCCGCACGATTC-CCTGATAAAACCGCAATATCGTTTTAT-GGAAAA 144
|||||.| |.|.|.| |||||..|.||.||.|| ||.||||.| |||||.
BPUM_2513___l 97 TCCGCAG-AGGCTGCACCTGAGCATACAGCCAT-TCATTTTCTAGGAAAG 144
BSNT_04168___ 145 AAACTCACCTTTCATG-ACATTCT-------GACGGATGCTCTTAAACTT 186
||..|||||| ||| ||| .|| ||||.|| |.|||||.
BPUM_2513___l 145 AACATCACCT---ATGAACA-GCTGCAAGAAGACGTAT----TGAAACTA 186
BSNT_04168___ 187 GC--AGCTTTTTTGCAGGGCAA---TGGCCTGCAAAAAGGAGACAGAGTG 231
|| |.|.| |.|..||| ||||.||.|||||||.||||||||.
BPUM_2513___l 187 GCCAATCAT-----CTGATCAAAATTGGCGTGAAAAAAGGCGACAGAGTA 231
BSNT_04168___ 232 GCTGTTATGCTGCCCAATTGCCCGCAAACAGTGATTTCTTATTATGGCGT 281
||..|||||||.||.||.|||||.|||.||||.||.||||||||.|..||
BPUM_2513___l 232 GCGATTATGCTACCGAACTGCCCTCAATCAGTCATCTCTTATTACGCTGT 281
BSNT_04168___ 282 CTTGTTTGCCGGTGGCATCGTGGTGCAGACGAATCCGCTTTATACCGAGC 331
.||..|.||.|||||||||||.||.||.||.||.|||||.|||||.|||.
BPUM_2513___l 282 TTTAATAGCAGGTGGCATCGTTGTTCAAACAAACCCGCTCTATACAGAGA 331
BSNT_04168___ 332 ACGAGCTTGAATACCAGCTTAGAGATGCTCAG------GTAAGTGTAATC 375
|.||.||.||||||||..|...||| ||| ..||||| .|.
BPUM_2513___l 332 AAGAACTGGAATACCAAATGGAAGA----CAGCGGCGCCAAAGTG--CTG 375
BSNT_04168___ 376 ATCACCTTAGATTTGCTTTTCCCGAAGGCAATA-AAAATGAAAACGTTAT 424
|||||..|.|||.||.|.|..||.||||| .|| |||||||||.||.|..
BPUM_2513___l 376 ATCACGCTCGATCTGTTGTATCCAAAGGC-TTATAAAATGAAAGCGCTGA 424
BSNT_04168___ 425 CAA-TAGTCGACCAGATTTTGATAACCAGCGTAAAAGACTATTTGCCTTT 473
||| || |.||.||..|..|.||.||||...||.||||.||||||||.||
BPUM_2513___l 425 CAAGTA-TGGAGCACTTCATCATTACCAAACTACAAGATTATTTGCCATT 473
BSNT_04168___ 474 TCCGAAGAATATTCTTTACCCGCT--------GACGCAAAAACAAAAAGT 515
||||||.||.||.||.|..||..| ||.|.|||||.|||| |
BPUM_2513___l 474 TCCGAAAAACATACTGTTTCCTATTGTGCAAAGAAGAAAAAATAAAA--T 521
BSNT_04168___ 516 GCATATCGACTTTGACAAAACAGCTAACATTCA-CACGTTCGCTTCCAG- 563
|..||||.|..|.||.|.||..|..|.|||||| ||| ||||| .|||
BPUM_2513___l 522 GGTTATCCAAGTCGAGAGAAATGAAACCATTCATCAC-TTCGC--GCAGA 568
BSNT_04168___ 564 -TATGAAGCAGGA--AAAAACTGAACTCCTGACAATCCCGAA-----GAT 605
|||||| ||.| |.||..|||||..|.||.| ||||.| ..|
BPUM_2513___l 569 TTATGAA--AGAATTAGAAGGTGAACAGCAGATA--CCCGCACTTTCCTT 614
BSNT_04168___ 606 CGATCCTGAGCATGATATCGCTGTCCTCCAGTATACCGGAGGAACAACCG 655
.|||||..|..|.|||||||||||..|.||.|||||.||.|||||.||||
BPUM_2513___l 615 TGATCCGAAAGAGGATATCGCTGTTTTGCAATATACAGGCGGAACGACCG 664
BSNT_04168___ 656 GAGCTCCAAAAGGGGTCATGCTCACGCACCAAAATATTTTGGCAAATACT 705
|....||||||||||||||||||||.||..|.||||||||.||.||||||
BPUM_2513___l 665 GTTTACCAAAAGGGGTCATGCTCACACATGAGAATATTTTAGCGAATACT 714
BSNT_04168___ 706 GAAATGTGCGCCGCTTGGATGTATGA---------CGTGAAAGAAGGCGC 746
|||||||||||..|||||||||||.| .|.|||||||.||
BPUM_2513___l 715 GAAATGTGCGCTTCTTGGATGTATAAAACGAACAGGGGGAAAGAACGC-- 762
BSNT_04168___ 747 TGAAAAAGTGCTGGGCATCGTCCCGTTTTTTCATGTCTACGGACTGACGG 796
.|.||.||||||.|.|||||||||||||||||||||.|||||.
BPUM_2513___l 763 -------ATCCTCGGCATCATTCCGTTTTTTCATGTCTACGGAATGACGA 805
BSNT_04168___ 797 CAGTCATGAA-CTATTCGATTAAACTAGGCTTCGAAATGATTCTTCTTCC 845
|.|||.|.|| || |.|..|.|||..|||...|.|||||||| ||..|||
BPUM_2513___l 806 CCGTCTTAAATCT-TGCTGTCAAAGAAGGGCACCAAATGATT-TTGCTCC 853
BSNT_04168___ 846 TAAG-TTTGAT-CCGCTCGAAACACTTAAAATCATCGACAAACACAAACC 893
.|.| |||||| .||| .||.||.||.||||.|||.||.|||||.||.||
BPUM_2513___l 854 CACGCTTTGATGTCGC-AGATACCCTCAAAACCATTGAAAAACAGAAGCC 902
BSNT_04168___ 894 GACGCTCTTTCCTGGCGCACCGACAATTTACATTGGCCTT-TTGCATCAC 942
||||||.|||||.||||||||.||.||.||.||| ||||| .||.||||
BPUM_2513___l 903 GACGCTATTTCCAGGCGCACCAACTATGTATATT-GCCTTGCTGAATCA- 950
BSNT_04168___ 943 CCCGA--ATTGCAGCATTATGATCTGTCATCCATTAAAAGC-TGTCTTAG 989
.|||| |||| |..|.|||||.|||||.|||| |.|..|| |||||.||
BPUM_2513___l 951 TCCGAACATTG-AAAAGTATGACCTGTCGTCCA-TCACTGCATGTCTAAG 998
BSNT_04168___ 990 CGGATCAGCCGCGCTCCCTGTGGAGGTAAAGCAGAAATTTGAAAAGGTGA 1039
|||.|||||.||.||.|||||.||.||.||.||.|..||||||||..|.|
BPUM_2513___l 999 CGGCTCAGCGGCACTACCTGTTGAAGTCAAACAAAGCTTTGAAAAATTAA 1048
BSNT_04168___ 1040 CTGGCGGAAAGCTT-GTGGAAGGCTATGGTTTGTCTGAGGCATCCCCAGT 1088
|.||.|| |.|||| |||||.||.|||||..|.||.||..|.||.||.||
BPUM_2513___l 1049 CAGGAGG-ACGCTTAGTGGAGGGGTATGGACTTTCAGAAACCTCTCCCGT 1097
BSNT_04168___ 1089 GACGCACGCCAATTTTATCTGGGGAAAAAACAAGCCGGGCAGTATCGGCT 1138
.||.||..|.||.|||.|.||||||...|||||..|.|||||.||.||||
BPUM_2513___l 1098 CACTCATTCTAACTTTTTATGGGGAGCGAACAAAACAGGCAGCATTGGCT 1147
BSNT_04168___ 1139 GTCCTTGGCCAAGTACGGACGCTGCGATCTATTCTGAAGAGACGGGTGAG 1188
|.||.|||||.|.|||.||.||.|..||.||.|..|||||.||.||.|
BPUM_2513___l 1148 GCCCGTGGCCTAATACAGATGCCGGTATTTACTGCGAAGAAACCGGAG-- 1195
BSNT_04168___ 1189 CTTGCC-----GCTCCGTATGAGCATGGAGAAATCATTGTAAAAGGTCCG 1233
||| |..||.|||||||||||.|||||.|||||.|||||.||.
BPUM_2513___l 1196 ---GCCTCAAAGAGCCATATGAGCATGGGGAAATTATTGTGAAAGGCCCT 1242
BSNT_04168___ 1234 CAAGTCATGAAAGGATACTGGAATAAACCAGAGGAAACCGCCGCAGTGCT 1283
||..||||||||||||||||||||.|.||||||||.||.|..||.|| ||
BPUM_2513___l 1243 CAGATCATGAAAGGATACTGGAATCAGCCAGAGGAGACAGAGGCTGT-CT 1291
BSNT_04168___ 1284 GA-GAGATGGCTGGCTGTTCACCGGGGACATGGGCTATATGGATGAAGAA 1332
.| |||||||||||.|.|||||.||.||.||.||.|||||||||||.||.
BPUM_2513___l 1292 TACGAGATGGCTGGTTTTTCACTGGAGATATAGGGTATATGGATGAGGAC 1341
BSNT_04168___ 1333 GGCTTTTTCTATATTGCTGACAGGAAGAAGGATATCATCATTGCCGGCGG 1382
||.|||||||||||.|.||||.|.||.||.|||.|.||||||||..||||
BPUM_2513___l 1342 GGTTTTTTCTATATCGTTGACCGAAAAAAAGATGTGATCATTGCGAGCGG 1391
BSNT_04168___ 1383 TTACAATATTTACCCGCGTGAGGTAGAAGAAGCGCTTTATGAACATGAAG 1432
.||.|||||||||||..|.|||||.||||||||.||||||||.|||| ||
BPUM_2513___l 1392 CTATAATATTTACCCAAGAGAGGTCGAAGAAGCCCTTTATGAGCATG-AG 1440
BSNT_04168___ 1433 C-CATACAGGAAATTGTTGTTGCAGGCGTTCCCGATTCCTACAGGGGAGA 1481
| ..||||.|||.||||.||||||||..||||.|||.|.|||||.|||||
BPUM_2513___l 1441 CTTGTACAAGAAGTTGTCGTTGCAGGTATTCCAGATCCGTACAGAGGAGA 1490
BSNT_04168___ 1482 AACAGTAAAAGCATTTGTCGTATTAAAGAAAGGCGCAAAAGCCGA----- 1526
||||||.|||||||||.|.|||...|| |||| ||.|||.|
BPUM_2513___l 1491 AACAGTGAAAGCATTTATTGTACCGAA-AAAG-----AATGCCTACTTAA 1534
BSNT_04168___ 1527 -TGCAGAAGAACTGGA-CGCTTTTGCGAGATCACGTCTAGCTCCCTATAA 1574
.|..||.|||||.|| ||| ||||..|||.|..|..|.||..|.|.|||
BPUM_2513___l 1535 CAGAGGACGAACTTGATCGC-TTTGTCAGAACGAGAATTGCCTCATTTAA 1583
BSNT_04168___ 1575 GGTGCCCAAAGC--CTATGACTTCAGAAAGGAGT---TGCCGAAAACGGC 1619
.||.|| |.|| .|||||.|| .||.|||| ||||.|||||.||
BPUM_2513___l 1584 AGTACC--ACGCGTGTATGAATT---TAAAGAGTCACTGCCTAAAACAGC 1628
BSNT_04168___ 1620 GGTGGGAAAAATTTTAAGAAGGCGT-TTACTTGAAGAAGAAACCGAAAA- 1667
.||.||.||.||.||..|.| |.|| |||.||||||||||| ||||
BPUM_2513___l 1629 CGTCGGGAAGATATTGCGCA-GAGTATTAATTGAAGAAGAA----AAAAG 1673
BSNT_04168___ 1668 ----------TCATCA---------------TATCAA---ATAA----- 1683
||.||| .||||| |.||
BPUM_2513___l 1674 AAAGCACGCTTCTTCAGCTGAAACGCCTGCCGATCAACCGAAAACATAG 1722
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