Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04181 and BPUM_2523

See Amino acid alignment / Visit BSNT_04181 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_04181___ysgA.1.24716.seq
#    -bsequence dna-align/BPUM_2523___ysgA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04181___ysgA-BPUM_2523___ysgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04181___ysgA-BPUM_2523___ysgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04181___ysgA
# 2: BPUM_2523___ysgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity:     505/827 (61.1%)
# Similarity:   505/827 (61.1%)
# Gaps:         163/827 (19.7%)
# Score: 1475.0
# 
#
#=======================================

BSNT_04181___      1 GTGAAACAAATAGAATCGGCAAAAAAC-CAAAAAGTGAAGGATTGGAAAA     49
                     .|||||.|.||||||||.||||||||| ||.|.| |.||..|.|||||||
BPUM_2523___y      1 TTGAAATATATAGAATCAGCAAAAAACACACACA-TTAAACAGTGGAAAA     49

BSNT_04181___     50 AGCTTCACACAAAAAAAGAACGAACAAAAACAAATACA-------TTTCT     92
                     ||||.||.||.||||||||||||||.|||||              |||||
BPUM_2523___y     50 AGCTCCATACGAAAAAAGAACGAACGAAAAC-------GGGGCTGTTTCT     92

BSNT_04181___     93 GATAGAGGGAGAACACCTCGTTGAAGAGGCGTTGAAAAGCCCGGGCATTG    142
                     ..|.||||||...|||.|.||.|||||.||.|||||.|| |||.||  ||
BPUM_2523___y     93 CGTGGAGGGAATCCACTTAGTCGAAGAAGCATTGAAGAG-CCGAGC--TG    139

BSNT_04181___    143 TGAAAGAAAT-------------CCTTGTAAAGGATGAAACGAGGATTCC    179
                     ||||||||.|             |||..|||             |.||||
BPUM_2523___y    140 TGAAAGAATTAATGGTCACATCGCCTGATAA-------------GCTTCC    176

BSNT_04181___    180 TTCAGATCTTGAGACTGGTATCCAGTGCTATATG--CTGAGTGAAGATGC    227
                     |||..||.|.||..|||..||  .|.|||.||||  |||||.|||||.||
BPUM_2523___y    177 TTCTCATATCGATCCTGACAT--TGAGCTTTATGAACTGAGCGAAGAAGC    224

BSNT_04181___    228 GTTTTCAGCTGTGACTGAAACCGAAACGCCGCAGCAGATTGCCGCTGTGT    277
                     .||||..||..||||.|||||.||||||||.|||||.||.||.||.||.|
BPUM_2523___y    225 CTTTTTTGCCATGACCGAAACGGAAACGCCTCAGCACATCGCGGCAGTTT    274

BSNT_04181___    278 GCCATA---TGCC------TGAAGAAAAG----CTGGCAACGGCACGCAA    314
                     |   ||   |.||      ||||||||||    .||  ||||.|      
BPUM_2523___y    275 G---TACAGTTCCTGTATTTGAAGAAAAGAAGTATG--AACGAC------    313

BSNT_04181___    315 GGTGCTGCTGATTGACGCTGTTCAAGATCCGGGAAACCTTGGCACAATGA    364
                       |.||.|||.|.||.||.||.||.||.||.||.||..|.||||||.|.|
BPUM_2523___y    314 --TTCTTCTGTTAGATGCAGTGCAGGACCCAGGTAATTTAGGCACACTCA    361

BSNT_04181___    365 TTCGAACGGCTGATGCGGCCGGTTTGGATGCGGTTGTACTCGGTGACGGC    414
                     ||||.||.||.|||||.||.|||.|.|||||.||..|..|.||.||.||.
BPUM_2523___y    362 TTCGGACAGCAGATGCAGCAGGTCTTGATGCTGTGATCTTAGGCGATGGA    411

BSNT_04181___    415 ACGGCGGACGCCTTTAACGGAAAAACACTGCGATCTGCTCAAGGATCTCA    464
                     ||.|..||.||.|.||||||||||||.||.||.||.||.|||||.||.||
BPUM_2523___y    412 ACAGTTGATGCGTATAACGGAAAAACGCTCCGTTCCGCACAAGGGTCACA    461

BSNT_04181___    465 CTTCCATATTCCTGTTGTGAGAAG-AAACCTGCCTTCATATGTGGAC---    510
                     .|||||..|.||..||.|  .||| |||   |||||||   |..|||   
BPUM_2523___y    462 TTTCCACCTACCCATTTT--AAAGCAAA---GCCTTCA---GCAGACCAT    503

BSNT_04181___    511 ----GAATTGAAGGCAG-AGGGCGTAAAAGTATACGGCACGGCGC-----    550
                         |.||..|||| || |.|||.|....||||||||.|..||||     
BPUM_2523___y    504 AGCAGCATGTAAGG-AGCAAGGCATTCCTGTATACGGAAGCGCGCTAAAC    552

BSNT_04181___    551 --TGCAAAACGG------AGCGCCTTAC--CAGGAGATTCCTCAGTCTGA    590
                       |||.|||..|      ||||  |.||  |||.||        |||   
BPUM_2523___y    553 AATGCGAAAGCGTATAAAAGCG--TAACGGCAGAAG--------GTC---    589

BSNT_04181___    591 ATCCTTTGCGCTCATTGTAGGAAATGAAGGTGCAGGGGTGGATGCTGCAT    640
                       |.||||||.|.|||||.||.||||||||   ||||             
BPUM_2523___y    590 --CGTTTGCGTTGATTGTGGGTAATGAAGG---AGGG-------------    621

BSNT_04181___    641 TGCTGGAAAAAAC----GGATT-------TGA---ACC------TGTACG    670
                         ||.|.||||    .||||       |||   |||      |.||.|
BPUM_2523___y    622 ----GGTATAAACCCAGAGATTCTTCAAATGACTGACCACAATTTATATG    667

BSNT_04181___    671 TGCCGCTTTACGGACAGGCTGAATCACTAAACGTTGCGGTTGCGGCTGCC    720
                     ||||..|.||.|||||||||||||||.||||.||.||.|||||.||.||.
BPUM_2523___y    668 TGCCAATGTATGGACAGGCTGAATCATTAAATGTGGCTGTTGCAGCGGCA    717

BSNT_04181___    721 ATCCTCGTGTATCACTTGCGAGGATAG    747
                     .|.||.||.|||||.|||||.||||||
BPUM_2523___y    718 GTTCTTGTTTATCATTTGCGTGGATAG    744


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