Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04208 and BPUM_2528

See Amino acid alignment / Visit BSNT_04208 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_04208___ysdB.1.24716.seq
#    -bsequence dna-align/BPUM_2528___ysdB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04208___ysdB-BPUM_2528___ysdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04208___ysdB-BPUM_2528___ysdB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04208___ysdB
# 2: BPUM_2528___ysdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 424
# Identity:     286/424 (67.5%)
# Similarity:   286/424 (67.5%)
# Gaps:          50/424 (11.8%)
# Score: 872.5
# 
#
#=======================================

BSNT_04208___      1 ATGTTTGTCATGGTTCTAAGGATTA--TTTTGCTTGCACTTTTTG----C     44
                     ||||||||.||..|..|.| ||.||  |.||| |||||||..|||    |
BPUM_2528___y      1 ATGTTTGTAATCCTCATTA-GACTAGCTCTTG-TTGCACTGCTTGTCTAC     48

BSNT_04208___     45 TTATTGTATTTATGCCGTGGTCAAATATGTCGCGAATCCTAAGAGAAGGC     94
                     .|.||.||  .|||  |.|||.||||...||.|.|||||.|..||||.||
BPUM_2528___y     49 ATCTTCTA--CATG--GCGGTAAAATTCTTCTCAAATCCGAGAAGAAAGC     94

BSNT_04208___     95 TTAAGCTGGCCCAATCAAAAGAACATTTTTATATTATTGATGAACAAAAC    144
                     |.||.|..||.||||.|||||||...||||||.||||.||.||||||.|.
BPUM_2528___y     95 TGAAACAAGCACAATTAAAAGAAGGCTTTTATTTTATGGACGAACAACAA    144

BSNT_04208___    145 AATACCCGGAAGAATTTTCAGCTGACG--TATAAAGGCGTGCTGTTTGAG    192
                     |||.|.||.||.||||||.|  |..||  ||||||||.||..|||||||.
BPUM_2528___y    145 AATGCACGTAAAAATTTTAA--TTTCGTCTATAAAGGTGTCTTGTTTGAA    192

BSNT_04208___    193 GGAGAAAAGCATATTCCTTCCAAGGATCATCCGCTGTTTATTCACACGAT    242
                     ||.||.||||||.|||||||.|||||||||||.||||||.|.|||.|.||
BPUM_2528___y    193 GGGGAGAAGCATGTTCCTTCTAAGGATCATCCTCTGTTTGTCCACTCCAT    242

BSNT_04208___    243 CTTTGTCTGGACAGAATCTCCTGAGAAGC----TGAA---ACATTTCTCT    285
                     .|..||.|||||.||.||.||||||||||    ||||   |||||     
BPUM_2528___y    243 TTACGTTTGGACGGAGTCACCTGAGAAGCTAAGTGAATTTACATT-----    287

BSNT_04208___    286 GCAAAAGATTTTGAGAACATTGAAG--AAAAAGTACTGGAACGATATC--    331
                       |.||||.||||| ||.||||.||  |||.|.|| |.|||||.||||  
BPUM_2528___y    288 --AGAAGACTTTGA-AAAATTGGAGGAAAACATTA-TCGAACGTTATCCT    333

BSNT_04208___    332 CAAATTGTAAGATTGACTGGGACCAGCCCATTAAA-----CTCGCAAAA-    375
                     ||||  ..||.|||||.|||||.||.|||||||||     |...||||| 
BPUM_2528___y    334 CAAA--CAAAAATTGATTGGGATCAACCCATTAAAAAAATCAAACAAAAG    381

BSNT_04208___    376 AAAGCAGAAGA------GCGTTAA    393
                     ||||.||.|||      |..||.|
BPUM_2528___y    382 AAAGGAGCAGATACGCCGTCTTGA    405


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.