Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04219 and BPUM_2535

See Amino acid alignment / Visit BSNT_04219 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_04219___lytT.1.24716.seq
#    -bsequence dna-align/BPUM_2535___lytT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04219___lytT-BPUM_2535___lytT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04219___lytT-BPUM_2535___lytT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04219___lytT
# 2: BPUM_2535___lytT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 787
# Identity:     514/787 (65.3%)
# Similarity:   514/787 (65.3%)
# Gaps:         110/787 (14.0%)
# Score: 1627.5
# 
#
#=======================================

BSNT_04219___      1 ATGCTCAGGGTGTTAATAGTTGATGATGAGATGCTGGCAAGAGATGAACT     50
                     .||.|.|..||.|||||.||.||||||||..||.|.||||||||.|||.|
BPUM_2535___l      1 TTGATAAACGTATTAATCGTAGATGATGAAGTGTTAGCAAGAGACGAATT     50

BSNT_04219___     51 GGCTTACTTGCTTA-----AGCGGGCCAATGAGGAAATGGAAATCCATGA     95
                     ....||||| .|||     |.||    ||.|||||..|..||||..|.||
BPUM_2535___l     51 AAAATACTT-ATTACACAGAACG----AAAGAGGATGTTCAAATAGAGGA     95

BSNT_04219___     96 AGCGGAAAATATCGAATCCGCTTTTGACCAAATGATGGATCAAAAACCTG    145
                     |||.||||||||.|||||.||||||||||..|||.|||||||.||.||.|
BPUM_2535___l     96 AGCAGAAAATATAGAATCAGCTTTTGACCGGATGGTGGATCATAAGCCGG    145

BSNT_04219___    146 ATTTGCTGTTTTTAGACGTTGATTTATCCGGAGAAAACGGTTTTGATATC    195
                     |..||||.|||||||||.||||||||||.||.|||||.||.||||||||.
BPUM_2535___l    146 ACCTGCTCTTTTTAGACATTGATTTATCAGGTGAAAATGGATTTGATATT    195

BSNT_04219___    196 GCAAAGCGATTGAAG----AA---AATGAAGCATCCTCCTGCTGTTGTGT    238
                     ||.||       |||    ||   .|||....||||.||.||..||||.|
BPUM_2535___l    196 GCCAA-------AAGGCTCAACCGGATGTCTGATCCGCCAGCGATTGTAT    238

BSNT_04219___    239 TTGCGACAGCGTATGACCAGTATGCGCTCAAAGCGTTTGAGGTGGACGCT    288
                     ||||||||||.|.|||.||.||||||||.||.|||||||||||....||.
BPUM_2535___l    239 TTGCGACAGCCTTTGATCAATATGCGCTAAAGGCGTTTGAGGTCAGTGCG    288

BSNT_04219___    289 CTTGATTATTTAACCAAGCCTTTCGATGAAGAAAGAATTCAGCAAACGCT    338
                     ||||||||.|||||.||.||.||.||||||||..|..||..|||||||.|
BPUM_2535___l    289 CTTGATTACTTAACAAAACCATTTGATGAAGAGCGGCTTTTGCAAACGAT    338

BSNT_04219___    339 GAAAAAATATAAAA-----AAGTCAATCGGGATATTGTAGAAACAGAGCA    383
                     ..||||.|.|||||     |||||           |||.||.||   |||
BPUM_2535___l    339 CCAAAAGTTTAAAAAGTGGAAGTC-----------TGTTGAGAC---GCA    374

BSNT_04219___    384 AAAC----------------AG--------CCATGCGGGCCAGCACAAGC    409
                     |.||                ||        ||||      |||||.||..
BPUM_2535___l    375 AGACCACCAGCTATCAGATGAGAAAATTCCCCAT------CAGCAAAAAT    418

BSNT_04219___    410 TCGCGCTATCTGTGGGGGAATCGATTGTGATTGTGGA--TACGAAG-GA-    455
                     |.||..|.||.||.|..||.||.|||||.|||.||.|  || |||| || 
BPUM_2535___l    419 TAGCCATCTCAGTCGATGATTCAATTGTCATTCTGCAAGTA-GAAGAGAT    467

BSNT_04219___    456 CAT-TATCTA--------TGCGGGAACAGAAGATGGTCATGTCAATGTAA    496
                     ||| |||.||        ||.||||    ||.|.|||        |||||
BPUM_2535___l    468 CATGTATGTAGGGCTTAGTGAGGGA----AAAAAGGT--------TGTAA    505

BSNT_04219___    497 AAACCTTCGATCATTCTTATAC--GGTCAGCGATACACTCGTTGTGATTG    544
                     ||||....|||||  |.|.|||  |||||..||..|.||.||.||.||||
BPUM_2535___l    506 AAACAAAGGATCA--CATGTACGAGGTCACAGAACCGCTTGTGGTCATTG    553

BSNT_04219___    545 AGAAAAAGCTGCCGGATGCTGATTTTATCCGTGTCCATCGGAGCTTTGTC    594
                     |.||.||.||.||.||.|||.|.|||||..|.||.|||||.||||.|.||
BPUM_2535___l    554 AAAAGAAACTCCCTGAGGCTTACTTTATGAGGGTTCATCGAAGCTATATC    603

BSNT_04219___    595 GTGAATACCGAATATATTAAAGAAATTCAGCCATGGTTTAATTCAACGTA    644
                     |||||.|||....||||.||||||.|.|||||.|||||||||||.|||||
BPUM_2535___l    604 GTGAACACCTCTCATATGAAAGAAGTACAGCCGTGGTTTAATTCGACGTA    653

BSNT_04219___    645 TAATCTG-ATCATGAAAGACGGATCGAAAATACCGGTCAGCCGGACATAT    693
                     ||||||| || ||||.|||||||||||..||.||.||||||||.||.||.
BPUM_2535___l    654 TAATCTGCAT-ATGACAGACGGATCGATTATTCCTGTCAGCCGTACGTAC    702

BSNT_04219___    694 GCGAAGGAATTGAAAAAGCTGCTCCATATTTGA----    726
                     ||.||.|||.|.||.|||..||||| ||.|.||    
BPUM_2535___l    703 GCCAAAGAACTAAAGAAGTCGCTCC-TACTAGAATAG    738


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04219 and BPUM_2535

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
