Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04220 and BPUM_2536

See Amino acid alignment / Visit BSNT_04220 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_04220___lytS.1.24716.seq
#    -bsequence dna-align/BPUM_2536___lytS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04220___lytS-BPUM_2536___lytS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04220___lytS-BPUM_2536___lytS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04220___lytS
# 2: BPUM_2536___lytS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1871
# Identity:    1239/1871 (66.2%)
# Similarity:  1239/1871 (66.2%)
# Gaps:         202/1871 (10.8%)
# Score: 3699.5
# 
#
#=======================================

BSNT_04220___      1 ATGATTCATTTAATGATTATGATGCTGGAGAGAGTGGGGATTATTGTTAT     50
                     .||.||||||||||.|||||||||.|.|||.|.||.|||||.||.|||||
BPUM_2536___l      1 TTGCTTCATTTAATTATTATGATGATCGAGCGTGTCGGGATCATCGTTAT     50

BSNT_04220___     51 ATTAGGGTTCATTCTCGCCCATACGAA--ACTTTTCAGACAAGCT----C     94
                     .||||||||..|.||.||||||..|||  .||||   ..|||.||    |
BPUM_2536___l     51 TTTAGGGTTTGTGCTTGCCCATGTGAAGGGCTTT---CGCAATCTATTGC     97

BSNT_04220___     95 TTCAGAATCAGGACGGCTAT--AAAGGAAAAGCGATTTTAATTTCTATTT    142
                     ||||.|||   ||.||.|.|  |||  |||.||..|..|..|.|.|||||
BPUM_2536___l     98 TTCATAAT---GAAGGGTTTCGAAA--AAAGGCAGTCCTTGTCTTTATTT    142

BSNT_04220___    143 TTTC-TCTTTTCAGCATCATCAGCAATTATACAGGCATCGAAATTCAAAG    191
                     ||.| |||||| ||.||.|||||||||||.|||||.||.|||||.|  ||
BPUM_2536___l    143 TTGCTTCTTTT-AGTATTATCAGCAATTACACAGGAATTGAAATCC--AG    189

BSNT_04220___    192 AA--ATATGATTGTAAACAATGACTGGGTGTTTACGATAGATC------C    233
                     .|  |.|||.|..|.|||.||||.|     |||.|.|| .|||      |
BPUM_2536___l    190 CAGCAGATGGTCATGAACCATGAGT-----TTTCCTAT-CATCTCGGCTC    233

BSNT_04220___    234 ATCAGGCTCTATCGCGAATACCCGTATTTTGGGCGTGGAAATCGGGGGCC    283
                     .|||.||||.||.||.|||||..|.||..||||..|.|||||.||.||..
BPUM_2536___l    234 GTCAAGCTCGATTGCCAATACGAGAATCATGGGGATCGAAATGGGCGGAT    283

BSNT_04220___    284 TTCTCGGAGGTCCGTTTGTAGGGGCCGGGATCGGCATA---CTT---GCG    327
                     |..|.|||||.||||||||      .||.||.|||..|   |||   ||.
BPUM_2536___l    284 TAATAGGAGGGCCGTTTGT------TGGTATTGGCGCAGGGCTTTTAGCT    327

BSNT_04220___    328 GGCCTGCATCGTTTTTCACTCGGTGGCAGCACGGCTTTAAGCTGTGCCGT    377
                     ||..|.||.||||.||||.|.||.||.||||||||..|.||||||||..|
BPUM_2536___l    328 GGTATTCACCGTTATTCATTAGGAGGAAGCACGGCACTCAGCTGTGCGAT    377

BSNT_04220___    378 ATCATCTATTTTAGCGGGTGTTCTTGCAGGCT-TGATCGGCAGGTA--TT    424
                     .||.||.||||||||.|||||..||||||||| || ||||.| |||  ||
BPUM_2536___l    378 TTCTTCGATTTTAGCCGGTGTGATTGCAGGCTATG-TCGGGA-GTAGGTT    425

BSNT_04220___    425 TTACGAAGC----GATATCGAATGCCGACACCGCGCATCGCCGCTCTTGT    470
                     |    ||||    || ||||||||..||||||.|||...|||||.|||.|
BPUM_2536___l    426 T----AAGCGGAAGA-ATCGAATGGTGACACCTCGCCAAGCCGCACTTTT    470

BSNT_04220___    471 GGGAATCGGC-ATGGAGTCACTGCAAATGATCATTATTTTGCTGATGGCA    519
                     .||..| ||| |||||.||..||||.|||.|||||||..|.||..|.|||
BPUM_2536___l    471 TGGTGT-GGCAATGGAATCGTTGCAGATGGTCATTATCCTTCTATTTGCA    519

BSNT_04220___    520 AAGCCGTTCAGTGACGCTTGGGAGCTTGTCAGCATGATCGGAATTCCGAT    569
                     |||||.||...|||.|||||||.||||||.||.||.||.|...|.|||||
BPUM_2536___l    520 AAGCCATTTGCTGATGCTTGGGGGCTTGTGAGTATTATTGCCTTGCCGAT    569

BSNT_04220___    570 GATACTCATCAATGGAACAGGCAGTTTTATTTTTCTGTCTATTATTCAAG    619
                     |||..|..|.|||||||..|||||.|||||.|||.|.||.||..|.||..
BPUM_2536___l    570 GATTTTTGTGAATGGAATTGGCAGCTTTATCTTTTTATCAATCTTACAGT    619

BSNT_04220___    620 CGATCATTC-GCAAGGAAGAACAGGCAAGAGCTCTCGAAACGCATCGAGT    668
                     |..|||||| |||| |||||.||.||||..||..|..|.||.||.||.||
BPUM_2536___l    620 CAGTCATTCGGCAA-GAAGAGCAAGCAAAGGCGATGCAGACACACCGCGT    668

BSNT_04220___    669 GCTGACGATTGCTGATCAGACACTTCCATTTTTTCGCCAAGGATTAAATG    718
                     ..|..|.||.||.|||||.||.|||||.||.||.||||||||.|||||||
BPUM_2536___l    669 ATTTTCAATCGCCGATCAAACGCTTCCTTTCTTCCGCCAAGGGTTAAATG    718

BSNT_04220___    719 AAAACTCCTGTAAAAGTGTAGCGGCTATTATCCATAAGCTGACAGGAACA    768
                     ||.|.||.|||||||||||.||||..||.||.|||....|.||||.||||
BPUM_2536___l    719 AACAGTCATGTAAAAGTGTGGCGGAGATCATTCATCGATTAACAGAAACA    768

BSNT_04220___    769 GATGCGGTGTCTCTCACTGATAAAGAAAAGATCCTTGCGCATGTCGGTGC    818
                     ||||||||.||..|.||.||||.|||||||||..|.||||||||.||||.
BPUM_2536___l    769 GATGCGGTCTCCTTAACCGATACAGAAAAGATTTTAGCGCATGTTGGTGA    818

BSNT_04220___    819 GGGAATGGATCACCACATCCCATCGAAAAGTTTGATCACCGGCCTGTCCA    868
                     .||.|..|||||.||.||.|||||||||||..|.||.||.||.|||||.|
BPUM_2536___l    819 TGGGACAGATCATCATATTCCATCGAAAAGCCTCATTACAGGGCTGTCGA    868

BSNT_04220___    869 AAAAGGTGATTAA--AACAGGGC-ATATTATGAAGGCGATTTCACAGGAA    915
                     ||.|.|| |||.|  |.|  ||| |.|||||||||||...|||..|.||.
BPUM_2536___l    869 AACAAGT-ATTGATGAGC--GGCAAAATTATGAAGGCACATTCGAAAGAC    915

BSNT_04220___    916 GAGATTGAATG------CACGCATGCTGAATGCCCTTTGCACGCTGCAAT    959
                     ||.||..|.||      |.|||||      |||||..|.||.||.||.||
BPUM_2536___l    916 GAAATCAATTGTTCAGTCCCGCAT------TGCCCGCTTCAAGCGGCGAT    959

BSNT_04220___    960 TGTCCTGCCGCTGACATCGAACGG-CAATACAATCGGCACCTTAAAAATG   1008
                     |||.|||||.||.||.||.||.|| ||| ||.||.||.||.|||||||||
BPUM_2536___l    960 TGTGCTGCCCCTCACCTCCAATGGTCAA-ACGATTGGAACATTAAAAATG   1008

BSNT_04220___   1009 TACTTTAAAAGC-CCGGCAGGCCTGAGTCA-GGTAGAGGAGGAACTTGCC   1056
                     || |||.||..| ||||..||..|.|| || |||.||.|||||.|||||.
BPUM_2536___l   1009 TA-TTTCAATTCTCCGGTCGGATTAAG-CAGGGTGGAAGAGGAGCTTGCA   1056

BSNT_04220___   1057 GAGGGGCTGGCCATGCTGTTTTCGACACAGCTTGAGCTTGGGGAAGCAGA   1106
                     |||||..||||.|||||.|||||.||||||||||||||||||||.||.||
BPUM_2536___l   1057 GAGGGTTTGGCGATGCTATTTTCTACACAGCTTGAGCTTGGGGAGGCGGA   1106

BSNT_04220___   1107 GCTGCAAAGCAAACTTCTCAAGGATGCTGAAATTAAAGCGCTTCAAGCAC   1156
                     |...||||||...||.||.||.|||||.||.||.|||||.||||||||.|
BPUM_2536___l   1107 GACCCAAAGCCGTCTGCTAAAAGATGCAGAGATCAAAGCACTTCAAGCGC   1156

BSNT_04220___   1157 AGGTGAATCCGCATTTTTTATTTAATGCGATCAACACGATTTCTGCGTTA   1206
                     |.|||||||||||.|||||||||||.||.||.||.||.||.||||..||.
BPUM_2536___l   1157 AAGTGAATCCGCACTTTTTATTTAACGCCATTAATACCATCTCTGTTTTG   1206

BSNT_04220___   1207 TGCCGTACAGATGTTGAAAAAACCCGTAAGCTCCTATTGCAGCTCAGTGT   1256
                     ||..|.||..||||.||.|...|..|.|||.|.||..|.|||||.|||.|
BPUM_2536___l   1207 TGTAGAACGAATGTAGAGATGGCTAGGAAGTTGCTGCTTCAGCTGAGTAT   1256

BSNT_04220___   1257 TTATTTTCGTTCAAACCTTCAAGGAGCGAGACAGCTGCTGATCCCGCTCT   1306
                     |||||||||.||.||..|.|||||.||..|.||||||||.|||||.|| |
BPUM_2536___l   1257 TTATTTTCGATCCAATTTGCAAGGCGCCCGCCAGCTGCTCATCCCACT-T   1305

BSNT_04220___   1307 CA-AAGGAGCTGAACCATCTTAACGCCTATTTGTCATTAGAACAGGCGCG   1355
                     || ||.||..|..|.|||.|..|.||.|||||||||.|.|||||.||..|
BPUM_2536___l   1306 CATAAAGAAATACAGCATGTAGAAGCATATTTGTCACTTGAACAAGCAAG   1355

BSNT_04220___   1356 TTTTCCCGGGAAATATAAAAT----TGAGCTT---AATATCGACAGCAGA   1398
                     .|||||    ||||| ||.||    |||.|||   ||| |..|.||.|| 
BPUM_2536___l   1356 GTTTCC----AAATA-AATATCACGTGACCTTTCAAAT-TGAAAAGGAG-   1398

BSNT_04220___   1399 CTGGAGCAGAT--TGAAATCCCTCCGTTTGTTTTGCAGGTGCTTGTCGAG   1446
                     |||||||||.|  ||  ||.||.||.|||||..|.|||||.|||||.||.
BPUM_2536___l   1399 CTGGAGCAGGTGATG--ATTCCGCCATTTGTGCTTCAGGTACTTGTTGAA   1446

BSNT_04220___   1447 AACGCGCTTCGGCACGCGTTTCCGAAAAAACAA--GACATGTGCAAGGTT   1494
                     ||.||..|..|.||.||.|||||.|||.|.|||  ||..||||       
BPUM_2536___l   1447 AATGCAGTGAGACATGCTTTTCCTAAACATCAAACGAGCTGTG-------   1489

BSNT_04220___   1495 ACAGTCTGTGTCTTATC-----TGAT----GATG--CATCCGTCTATATG   1533
                      .||||   .||.||||     ||||    ||||  |||  |||.|||||
BPUM_2536___l   1490 -AAGTC---ATCGTATCCGCTGTGATGAAAGATGGACAT--GTCAATATG   1533

BSNT_04220___   1534 AAGGTGGCGGATAACGGACGCGGAATTCCGCCG-----GACGTCTTGCCG   1578
                     ||.|||.|||||||.||||..|||||     ||     |||         
BPUM_2536___l   1534 AAAGTGACGGATAATGGACAAGGAAT-----CGAGAATGAC---------   1569

BSNT_04220___   1579 GAA-CTGGGAAAG------AAA---CCGTTTCCGTCTAAGGAGGGAACCG   1618
                      || .|||...||      |||   ||..||...||.||.||.|||||.|
BPUM_2536___l   1570 -AAGATGGCTCAGTTATTAAAAGCGCCTGTTGAATCAAAAGAAGGAACAG   1618

BSNT_04220___   1619 GTACAGCGCTTTATAACCTAAATCAGCGGCTGATCGGTTTATTCGGACAG   1668
                     ||||.||.||||.|||..||.||||||||.|.|..||..|.||.|| |||
BPUM_2536___l   1619 GTACGGCTCTTTTTAATTTAGATCAGCGGTTAAGAGGGATTTTTGG-CAG   1667

BSNT_04220___   1669 -CAGGCTGCACTGCATATCAGCAGTGAGGTTCATA------AAGGGACAG   1711
                      ||.||.||.|    ||||  ||      ||||||      ||||.||.|
BPUM_2536___l   1668 ACAAGCAGCTC----TATC--CA------TTCATAGCAGCCAAGGCACTG   1705

BSNT_04220___   1712 AGGTCTCCTTTCAAGTGCCAATGCAACAGATGAAAGAGGGAGAAGAACAT   1761
                     |..||||.||||...|.||||||.|..|..|.|||.|||         ||
BPUM_2536___l   1706 ACATCTCATTTCGCATTCCAATGGACTATGTAAAAAAGG---------AT   1746

BSNT_04220___   1762 GCTCAGGGTGTTAATAGTTGA   1782
                     |.|       ||  |.|||||
BPUM_2536___l   1747 GAT-------TT--TCGTTGA   1758


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