Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04224 and BPUM_2539

See Amino acid alignment / Visit BSNT_04224 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:45
# Commandline: needle
#    -asequence dna-align/BSNT_04224___thrS.1.24716.seq
#    -bsequence dna-align/BPUM_2539___thrS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04224___thrS-BPUM_2539___thrS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04224___thrS-BPUM_2539___thrS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04224___thrS
# 2: BPUM_2539___thrS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1964
# Identity:    1535/1964 (78.2%)
# Similarity:  1535/1964 (78.2%)
# Gaps:          55/1964 ( 2.8%)
# Score: 5980.5
# 
#
#=======================================

BSNT_04224___      1 ATGTCAGATATGGTAAAAA------TCACATTTCCTGATGGAGCAGTCAA     44
                     ||||||||      |.|||      |.||||||||.||||||||.|||||
BPUM_2539___t      1 ATGTCAGA------ACAAATTCAACTTACATTTCCAGATGGAGCGGTCAA     44

BSNT_04224___     45 GGAGTTTGCGAAAGGAACAACAACAGAAGATATCGCGGCATCCATCAGTC     94
                     ||||||||..|||..|.|.|||||||||||.|||||||||||.||.||.|
BPUM_2539___t     45 GGAGTTTGACAAAACAGCTACAACAGAAGACATCGCGGCATCAATTAGCC     94

BSNT_04224___     95 CGGGATTAAAGAAAAAATCATTAGCCGGAAAACTGAACGGAAAAGAAATC    144
                     |.||..|||||||||||.|..|.|||||.|||.|||||||.||||||||.
BPUM_2539___t     95 CAGGCCTAAAGAAAAAAGCGCTTGCCGGTAAATTGAACGGCAAAGAAATA    144

BSNT_04224___    145 GATTTGAGAACGCCGATCAAT-GAAGACGGTACAGTGGAAATCATTACAG    193
                     |||.||.|.||||||.| |.| |||...||.|||.|.||.|||||.||||
BPUM_2539___t    145 GATCTGCGTACGCCGCT-ACTAGAAAGTGGAACAATTGAGATCATCACAG    193

BSNT_04224___    194 ----AAGGCTCAGAAGAAGGTCTTCAAATTATGCGCCACAGTACGGCTCA    239
                         |||    .||.||||..||..|.||||||||||||||.||.|||||
BPUM_2539___t    194 ATAAAAG----TGATGAAGCACTCGACATTATGCGCCACAGCACAGCTCA    239

BSNT_04224___    240 CTTGCTGGCTCAAGCGATTAAACGC----ATCTACAAG-----GATGTTA    280
                     .|||||.||.||.||.||.||||||    ||..|.|||     .|.|||.
BPUM_2539___t    240 TTTGCTAGCACAGGCAATCAAACGCCTGTATGGAAAAGAACATCACGTTC    289

BSNT_04224___    281 AATTCGGCGTCGGTCCGGTTATCGAAAACGGTTTTTACTACGATGTAGAA    330
                     |.||.|||||.|||||.||.||.|||||.||.||.|||||||||||.||.
BPUM_2539___t    290 AGTTTGGCGTAGGTCCTGTGATTGAAAATGGCTTCTACTACGATGTGGAC    339

BSNT_04224___    331 ATGGACGAAGCGATTACACCGGAGGATCTGCCGAAAATCGAGAAAGAAAT    380
                     ||.||.|..||.||.|||||.||.|||.|.||.||.||.||.||||||||
BPUM_2539___t    340 ATCGATGTTGCCATCACACCAGAAGATTTACCAAAGATTGAAAAAGAAAT    389

BSNT_04224___    381 GAAAAAAATCGTTAA-TGCGAACCTGCCGATCGTTCGAAAAGAAG--TCA    427
                     ||||||||||.|||| .|| ||..|.||.||||..||||..||||  |||
BPUM_2539___t    390 GAAAAAAATCATTAACAGC-AATTTACCAATCGAGCGAATTGAAGTTTCA    438

BSNT_04224___    428 GCCGTGAAGAAGCGAAAGCCCGTTTTGCGGAAATCGGCGACGACCTGAAG    477
                       .|.|||||.||||||...||.||||..|..||.||.||..|..|.|||
BPUM_2539___t    439 --AGAGAAGACGCGAAAAAACGCTTTGAAGCGATTGGTGATCAATTAAAG    486

BSNT_04224___    478 CTTGAACTATTGGATGCGATTCCTGAAGGAGAAACCGTTTCGATCTATGA    527
                     |||||.||.||.||.||||||||.|||||.|||.|.|||.||||.|||||
BPUM_2539___t    487 CTTGAGCTGTTAGAAGCGATTCCAGAAGGTGAAGCTGTTACGATTTATGA    536

BSNT_04224___    528 GCAAGGCGAATTCTTTGACCTGTGCCGCGGTGTCCATGTTCCTTCAACCG    577
                     |||.||.||.|||||||||||.||||||||..|.||..|.||.|||||.|
BPUM_2539___t    537 GCAGGGTGAGTTCTTTGACCTCTGCCGCGGGATTCACTTGCCATCAACAG    586

BSNT_04224___    578 GAAAAATCAAAGAGTTTAAGCTGTTAAGCCTTGCAGGCGCATACTGGCGC    627
                     |.|||||||||||||||||||||.||||||||||.||.|||||||||.|.
BPUM_2539___t    587 GGAAAATCAAAGAGTTTAAGCTGCTAAGCCTTGCTGGTGCATACTGGAGA    636

BSNT_04224___    628 GGCGACAGCAAAAACCAAATGCTTCAGCGCGTATATGGTACAGCTTTCTT    677
                     ||.||||||||.||.||||||||||||||..|.||.||||||||||||||
BPUM_2539___t    637 GGTGACAGCAACAATCAAATGCTTCAGCGTATTTACGGTACAGCTTTCTT    686

BSNT_04224___    678 CAAAAAAGCTGATCTTGAAGAGCATCTT-CGTATGCTAGAAGAAGCGAAA    726
                     ||..||||.||||||..|.||||| ||| ||..||||.||||||||||||
BPUM_2539___t    687 CAGCAAAGATGATCTAAATGAGCA-CTTACGCCTGCTTGAAGAAGCGAAA    735

BSNT_04224___    727 GAACGCGACCACAGAAAGCTCGGCAAAGAATTAAAGCTGTTTGCGAACTC    776
                     ||||||||.|||.|.||.||.||.|||||..||||.||||||||||||||
BPUM_2539___t    736 GAACGCGATCACCGTAAACTAGGAAAAGAGCTAAAACTGTTTGCGAACTC    785

BSNT_04224___    777 TCAAAAAGTCGGACAAGGCCTGCCGCTTTGGCTGCCAAAAGGCGCGACAA    826
                     ||||||.||.||.|||||.||.||.||||||||||||||||||||.||.|
BPUM_2539___t    786 TCAAAAGGTAGGTCAAGGTCTACCACTTTGGCTGCCAAAAGGCGCAACGA    835

BSNT_04224___    827 TCCGCCGCGTCATCGAGCGCTACATTGTCGATAAAGAAATCAGCCTCGGC    876
                     ||||||||||.||.|||||.||||||||||||||||||.|..||||.||.
BPUM_2539___t    836 TCCGCCGCGTGATTGAGCGTTACATTGTCGATAAAGAAGTACGCCTTGGT    885

BSNT_04224___    877 TATGAGCACGTATACACACCTGTGCTAGGCAGCAAA----GAGCTGTATG    922
                     ||||||||.||.||.|||||.||.||    .|||||    ||..|||||.
BPUM_2539___t    886 TATGAGCATGTGTATACACCAGTTCT----TGCAAATGTTGAATTGTATA    931

BSNT_04224___    923 AAACATCAGGACACTGGGACCATTATCAGGAAGGCATGTTCCCTCCGATG    972
                     ||||||||||.|||||||..||||||||.||||..|||||||||..||||
BPUM_2539___t    932 AAACATCAGGGCACTGGGCGCATTATCAAGAAGATATGTTCCCTGTGATG    981

BSNT_04224___    973 GAAATGGACAATGAAACACTTGTATTGCGTCCGATGAACTGTCCGCACCA   1022
                     |||||||||||.|||...|||||..|.|||||.|||||||||||||||||
BPUM_2539___t    982 GAAATGGACAACGAAGATCTTGTTCTCCGTCCAATGAACTGTCCGCACCA   1031

BSNT_04224___   1023 TATGATGATTTACAAACAAGA----CATTCACAGTTACCGCGAGCTTCCG   1068
                     ||||||||||||||||.|.||    |||    ||.||.|||||..|.||.
BPUM_2539___t   1032 TATGATGATTTACAAAAACGAGCCGCAT----AGCTATCGCGAATTGCCA   1077

BSNT_04224___   1069 ATTCGTATTGCGGAGCTTGGAACGATGCACCGCTATGAAATGTCAGGTGC   1118
                     |||||||||||.||||||||.||.||||||||||||||||||||||||||
BPUM_2539___t   1078 ATTCGTATTGCAGAGCTTGGTACAATGCACCGCTATGAAATGTCAGGTGC   1127

BSNT_04224___   1119 GCTGTCAGGGCTTCAACGGGTACGCGGAATGACGTTAAATGATGCACACA   1168
                     ..|.||.||.|||||.||.||.|||||.|||||.|||||.|||||.||.|
BPUM_2539___t   1128 TTTATCCGGCCTTCAGCGTGTTCGCGGTATGACATTAAACGATGCCCATA   1177

BSNT_04224___   1169 TCTTTGTGCGCCCGGATCAAATTAAGGATGAGTTTATCCGTACAGTCCGT   1218
                     |||||||.||.||.||||||||.||.||.||.||.||.||||||||.||.
BPUM_2539___t   1178 TCTTTGTTCGTCCAGATCAAATCAAAGACGAATTCATTCGTACAGTTCGC   1227

BSNT_04224___   1219 TTAATCCAGGATGTTTATGAAGACTTCGGTTTAAGTGATTACACATTCCG   1268
                     .||||..|.||.||.|||.|||||||.||.||.|.|||.|||||||||||
BPUM_2539___t   1228 CTAATTGAAGAAGTGTATCAAGACTTTGGCTTGAATGACTACACATTCCG   1277

BSNT_04224___   1269 TCTGTCTTACCGCGATCCGGAAGATACAGAGAAATATTTTGATGACGATG   1318
                     ..|.||||||||.|||||.||||||||.|||||.|||||.||.||.||||
BPUM_2539___t   1278 CTTATCTTACCGTGATCCAGAAGATACTGAGAAGTATTTCGACGATGATG   1327

BSNT_04224___   1319 AAATGTGGAACAAAGCGCAATCCATGCTGAAAGAGGCAATGGACGAAATC   1368
                     ..||||||||.|||||.|||||.|||||.||.||.|||||||||||..|.
BPUM_2539___t   1328 CGATGTGGAATAAAGCACAATCGATGCTAAAGGATGCAATGGACGAGCTT   1377

BSNT_04224___   1369 GGCCACGACTATTACGAAGCAGAAGGTGAAGCGGCATTCTACGGCCCTAA   1418
                     ||.||.||||||||.|||||||||||.|||||.|||||.||.||.||.||
BPUM_2539___t   1378 GGTCATGACTATTATGAAGCAGAAGGCGAAGCAGCATTTTATGGTCCGAA   1427

BSNT_04224___   1419 ACTTGATGTCCAAGTGAAAACTGCGATCGGAAAAGAAGAAACACTGTCTA   1468
                     .|||||.||.||||||||.||.||..|.|||||||||||.||||||||||
BPUM_2539___t   1428 GCTTGACGTGCAAGTGAAGACAGCTCTTGGAAAAGAAGAGACACTGTCTA   1477

BSNT_04224___   1469 CGGTACAGCTTGATTTCTTATTGCCGGAACGTTTCGACCTGACATACATC   1518
                     |.||||||||||||||||||.|.||.||.||.|||||.||.|||||.||.
BPUM_2539___t   1478 CTGTACAGCTTGATTTCTTACTTCCAGAGCGCTTCGATCTCACATATATT   1527

BSNT_04224___   1519 GGTGAGGACGGCAAGCAGCACCGTCCGGTTGTCATTCACAGAGGTGTCGT   1568
                     ||.||.||.||||||||.||.|||||.||.||.|||||.||||||||.||
BPUM_2539___t   1528 GGAGAAGATGGCAAGCACCATCGTCCAGTCGTGATTCATAGAGGTGTTGT   1577

BSNT_04224___   1569 TTCAACAATGGAACGCTTTGTTGCCTTCTTAATCGAAGAACACAAAGGCG   1618
                     |||.||||||||.||.|||||||||||||||||.||||||.|||||||.|
BPUM_2539___t   1578 TTCTACAATGGAGCGTTTTGTTGCCTTCTTAATTGAAGAATACAAAGGAG   1627

BSNT_04224___   1619 CGCTGCCGACATGGCTTGCACCGGTTCAGTTCCAAGTCATTCCGGTTTCT   1668
                     |.||.||.||.|||||.|||||.||.||.|||||||||||.||.|||||.
BPUM_2539___t   1628 CCCTACCAACTTGGCTGGCACCTGTACAATTCCAAGTCATCCCAGTTTCA   1677

BSNT_04224___   1669 CCGGCTGTGCATTTAGACTACGCGAAAAAAGTGCAGGAACGCCTGCAGCG   1718
                     ||..||||.|||||||||||.|||||||||||.||.|||||..||||||.
BPUM_2539___t   1678 CCATCTGTCCATTTAGACTATGCGAAAAAAGTACAAGAACGTTTGCAGCT   1727

BSNT_04224___   1719 TGAAGGCCTGCGTGTTGAAGTCGACAGCCGCGATGAAAAAATCGGCTACA   1768
                     ||||||.||.||||||||..|.||||||||.||||||||||||||.||||
BPUM_2539___t   1728 TGAAGGTCTTCGTGTTGAGCTTGACAGCCGTGATGAAAAAATCGGATACA   1777

BSNT_04224___   1769 AAATCCGTGAAGCGCAAATGCAAAAAATCCCGTACATGCTGGTGGTCGGT   1818
                     ||||..|.|||||||||||||||||.||||||||||||||.||||||||.
BPUM_2539___t   1778 AAATTAGAGAAGCGCAAATGCAAAAGATCCCGTACATGCTAGTGGTCGGA   1827

BSNT_04224___   1819 GACCAAGAAGCAGAAAACGGCGCGGTAAACGTGCGTAAATACGGAGAGCA   1868
                     ||.||||||||||||||.|||||.||.||.||..|.||||||||||||||
BPUM_2539___t   1828 GATCAAGAAGCAGAAAATGGCGCAGTCAATGTAAGAAAATACGGAGAGCA   1877

BSNT_04224___   1869 GAACTCTGAAACGATTTCTCTTGATGAGTTTGTGAAAAAGGCAGTAGCTG   1918
                     ..|.||.|||||.||...||||||.|..|||||||||.|.|||||.||.|
BPUM_2539___t   1878 AGATTCAGAAACAATGGATCTTGAAGCCTTTGTGAAACATGCAGTCGCAG   1927

BSNT_04224___   1919 AAGCGAAAAAATAA   1932
                     ||||||||||||||
BPUM_2539___t   1928 AAGCGAAAAAATAA   1941


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.