Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04227 and BPUM_2540
See
Amino acid alignment /
Visit
BSNT_04227 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_04227___ytxC.1.24716.seq
# -bsequence dna-align/BPUM_2540___ytxC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04227___ytxC-BPUM_2540___ytxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04227___ytxC-BPUM_2540___ytxC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04227___ytxC
# 2: BPUM_2540___ytxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 949
# Identity: 584/949 (61.5%)
# Similarity: 584/949 (61.5%)
# Gaps: 182/949 (19.2%)
# Score: 1616.5
#
#
#=======================================
BSNT_04227___ 1 ATGCTTGAAATAATCTTTGAAGATGACCATGATGCAGCCGCTTTTTTACA 50
||||||||||||||||||||||||||..|||||.|.||||||||||||||
BPUM_2540___y 1 ATGCTTGAAATAATCTTTGAAGATGAATATGATACCGCCGCTTTTTTACA 50
BSNT_04227___ 51 TCTCATTCAGCATTCGGACGATCGG-AACA-ATATC-ATTGTCCATGAAG 97
|||...|.|.||.|.||||..|||| |.|| ||.|| ||| ||..|||
BPUM_2540___y 51 TCTTGCTGAACACTTGGACAGTCGGCATCACATGTCAATT---CAACAAG 97
BSNT_04227___ 98 G---------------CATA----CGAAAAATCGGGATTGAAAAAGCGAA 128
| |||| |||| |||.|.|||| |||
BPUM_2540___y 98 GGAAAGACCGACTTCTCATAGAGGCGAA------GGAATCAAAA---GAA 138
BSNT_04227___ 129 TCCGGCTTT--TCCTATTCAGCGTTTTATGGAGCCGATT-CTGGTCAAAT 175
||..|| .||.|||..||| ||| ||| |||||..|.|
BPUM_2540___y 139 ---GGACTTGAGCCCATTGTGCG---------GCC-ATTACTGGTTCACT 175
BSNT_04227___ 176 TTTTTTTGGAATGCAAAGAAGACGAGCATATGCTG--TCATTGATTGAGG 223
||||||||||||||||||||.|.||||..|||| | .|||| .||||..
BPUM_2540___y 176 TTTTTTTGGAATGCAAAGAAAATGAGCGCATGC-GCAGCATT-CTTGAAA 223
BSNT_04227___ 224 AAACTTATTGTTTCACGGACCAGGATGAACAGCAGCAAATCCTT--CAGC 271
|.||.||||..||.|..||.|..||.||||||||.|||||.||| ||
BPUM_2540___y 224 ACACGTATTTATTTAAAGATCCTGAAGAACAGCACCAAATTCTTTCCA-- 271
BSNT_04227___ 272 TCGCACACAGTATTATTGAA-GGTGAAGCAGCCGATCTTCCGTTTGAGCC 320
||||.|||||.||.| |||| ||.||...||..|||.|||| |.
BPUM_2540___y 272 TCGCCCACAGCATCA-TGAATGGGGATTTAGATGATATTCC-------CG 313
BSNT_04227___ 321 GC-----TGAAG--CTTTCACG-GA---------AACAATCTATTTTGGA 353
|| |.||| |..|||.| || ||||| |
BPUM_2540___y 314 GCATTCATCAAGAACCATCAAGAGAAGCCCTGTTAACAA----------A 353
BSNT_04227___ 354 TGAACTCCAAACGATCTGTTTAGAGGAAGGAGTATTTTACATTCGCTCCT 403
.||.||..|.|||||.|.||||.|..||||..|.||||..|||.||||.|
BPUM_2540___y 354 GGAGCTTGAGACGATTTCTTTACATCAAGGTATTTTTTCAATTGGCTCAT 403
BSNT_04227___ 404 TTCAGACCTTCCGACTTGGATCATACTATAAGCA----GCTGAGAG---- 445
||..|||.|||.|.|| .|||.|.|||.| || ||||| ||
BPUM_2540___y 404 TTATGACATTCAGGCT---GTCAGAGTATGA-CAGGAGGCTGA-AGAACT 448
BSNT_04227___ 446 ATATTACAGAAGCAGCGATTGATGAATATAAGATGGAACAGGAATATCAA 495
||.|| ||||...|.|||||.|||||.||.||||||||.|||||||||
BPUM_2540___y 449 ATGTT---GAAGTCTCCATTGAAGAATACAAAATGGAACAAGAATATCAA 495
BSNT_04227___ 496 AACTTTATTCAAACACTCAGAGACTATGTAAACGCCAAACAGCCGCGAA- 544
||||||||||||.|.||..||||||||||.|..||.|||.|.| ||||
BPUM_2540___y 496 AACTTTATTCAATCGCTTCGAGACTATGTGATGGCAAAAGAAC--CGAAG 543
BSNT_04227___ 545 -TCAAAAAAGTGCATATTGTCCAT---GATGGTTCCTTTACATTATGGGA 590
||.|||||||.|||.||||.||| |||.| |||....||| |||||
BPUM_2540___y 544 CTCGAAAAAGTACATGTTGTGCATCAAGATCG--CCTGATGATT-TGGGA 590
BSNT_04227___ 591 GCTGCGCTATGTGCCGGAACGGGA--AAAAATGAAATACATAGACAGGAG 638
..|.||.||.|...|.||.||.|| ||||| .|||||||||||| ||.
BPUM_2540___y 591 ATTTCGGTACGCTTCTGAGCGTGATCAAAAA--CAATACATAGACA-GAC 637
BSNT_04227___ 639 A-TTTGTCCGGGATCATCCTATGTATATTGATTCTCATTTGCTCGCGCCG 687
| |||||..|.||.|||||.||||||||||||||.||..||.|.||.||.
BPUM_2540___y 638 AGTTTGTAAGAGAGCATCCAATGTATATTGATTCGCAGCTGATTGCACCA 687
BSNT_04227___ 688 CTGATTTCCATTGCGCCTGATGAAGTCGTGCTTTATACCGACCAGCCCGA 737
||..|.|||||.||||||.|..||.|.|..||.|.|||..|..|..|.|.
BPUM_2540___y 688 CTCGTATCCATAGCGCCTCAAAAAATTGACCTGTTTACAAATGATACAGG 737
BSNT_04227___ 738 GCACATGATGG--CAAGGACCATTCAAAACGTATTTCAAGAGAGAGTGGA 785
.|||..||||| ||| |||||||||||..|.||||||||.||.||.||
BPUM_2540___y 738 TCACTCGATGGTACAA--ACCATTCAAAATATTTTTCAAGAAAGGGTCGA 785
BSNT_04227___ 786 AATGCTTCC--GCTGCATGCTTTTACAGA--------------------- 812
..| .|||| ||| |||.|.|||..|||
BPUM_2540___y 786 GGT-ATTCCCGGCT-CATTCATTTCAAGAACACCATGTTCGATTTGTCCA 833
BSNT_04227___ 813 --------TG---CAGAAATACCGGTG--AAGCAATC--GAAAGGATGA 846
|| |||||| .||| ||||..|| ||
BPUM_2540___y 834 TGACCATTTGGAACAGAAA----AGTGAAAAGCTTTCTTGA-------- 870
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.