Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04243 and BPUM_2549

See Amino acid alignment / Visit BSNT_04243 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:46
# Commandline: needle
#    -asequence dna-align/BSNT_04243.1.24716.seq
#    -bsequence dna-align/BPUM_2549___ytaF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04243-BPUM_2549___ytaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04243-BPUM_2549___ytaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04243
# 2: BPUM_2549___ytaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 647
# Identity:     448/647 (69.2%)
# Similarity:   448/647 (69.2%)
# Gaps:          28/647 ( 4.3%)
# Score: 1478.5
# 
#
#=======================================

BSNT_04243         1 ATGCAAATGGTTTCTATACTGCTGCTG------GCGTTGGCTGTCAGCTT     44
                           |||.||||.||...|||.|||      ||..|.||.||.|||.|
BPUM_2549___y      1 ------ATGATTTCGATTTCGCTCCTGTTTTTAGCTATTGCAGTTAGCAT     44

BSNT_04243        45 GGACAGTTTTTCAGTCGGATTTACGTACGGATTGAGAAAAATGAAAATAC     94
                     .|||||.|||||.||.||.||||||||.||..|..|.|||||||..||.|
BPUM_2549___y     45 CGACAGCTTTTCTGTAGGCTTTACGTATGGTCTCCGCAAAATGAGGATCC     94

BSNT_04243        95 CGTTTAAAGCGATTTTGGTTATCGCCTGCTGTTCCGGTGCTGTCATGTTT    144
                     |.||||||||.||..|..||||.||.|||||.||.||...|||..||.|.
BPUM_2549___y     95 CATTTAAAGCCATCGTCATTATTGCATGCTGCTCAGGGATTGTGCTGCTC    144

BSNT_04243       145 ATATCCATGCTGATCGGAAGCTTTCTCACGAAGTTTTTTCCTGTATATGT    194
                     ||.||.||||||||.||.|||.|.||.||||..|||.|.|||||.|..||
BPUM_2549___y    145 ATTTCTATGCTGATTGGCAGCCTGCTGACGACATTTCTCCCTGTTTCAGT    194

BSNT_04243       195 GACGGAGAAGCTTGGCGGTTTGATATTGGTTGGAATCGGTGCGTGGGTTC    244
                     |||.||.||.||.||.||....||.||..|||..|||||....|||||.|
BPUM_2549___y    195 GACCGATAAACTGGGGGGAGGCATTTTAATTGCCATCGGCCTTTGGGTCC    244

BSNT_04243       245 TGTATCAATTTTTCAAACCGGCAAAAGATAAAGAATACCTATTGCATGAA    294
                     ||||||||||||.||||||.||.|||||....||.|..||..|.||||||
BPUM_2549___y    245 TGTATCAATTTTACAAACCAGCGAAAGAGCGTGATTTGCTTCTTCATGAA    294

BSNT_04243       295 AAAACACTGCTTAATCTAGAGGTTCGGTCATTAGGAATTGTGATTCATAT    344
                     ||.|||.||||||||.|.||.||.|..||..|.||..||||.|||||.||
BPUM_2549___y    295 AAGACATTGCTTAATGTGGAAGTCCAATCGCTTGGGCTTGTCATTCACAT    344

BSNT_04243       345 TTTGAGAAAACCCATGAGTGCGGATATCGACAAATCGGGTGTGATCAACG    394
                     |||.|||||.||.|..|||||.|||||.|||..|||.||...|||.||.|
BPUM_2549___y    345 TTTAAGAAAGCCGACAAGTGCAGATATTGACCGATCTGGGACGATTAATG    394

BSNT_04243       395 GAATTGAGGCGGT-CTTATTGGGATTTGCCTTATCGATTGATGCCTTTGG    443
                     |.||.||.||.|| |||.|| |||.||||.|||||.||||||||.|||||
BPUM_2549___y    395 GGATAGAAGCTGTCCTTCTT-GGAATTGCTTTATCCATTGATGCATTTGG    443

BSNT_04243       444 AGCAGGTATAGGCGCAGCCATTCTCGGTTTTTCGCCGATTGTGATGAGCA    493
                     .|||||.||.||||||||.|||||.||||||||.||.|||||.|||||.|
BPUM_2549___y    444 CGCAGGGATTGGCGCAGCGATTCTAGGTTTTTCTCCAATTGTCATGAGTA    493

BSNT_04243       494 TCGCCGTGGCAATCATGAGCTCGCTGTTTGTATCAATTGGAAT-CAATGC    542
                     ||.|.||.|||.|.|||||.||.||.|||||||..||.||..| |.| ||
BPUM_2549___y    494 TCACGGTCGCAGTGATGAGTTCACTTTTTGTATGTATCGGGCTACGA-GC    542

BSNT_04243       543 CGGCCATTTTCTGTCTAAGTGGAAATGGATCGATAAAATGGCGTTTTTGC    592
                     |||.||||...||.|.||.|||...||||||||||||.|.||.|.|||.|
BPUM_2549___y    543 CGGTCATTACTTGGCAAATTGGCGCTGGATCGATAAACTCGCATGTTTAC    592

BSNT_04243       593 CGGGGCTTC------TATTAATCACGATTGGGCTCTGGAAATTGTAA    633
                     |.|||||||      ||||||||      |||.|.|||||..|||||
BPUM_2549___y    593 CAGGGCTTCTGCTCATATTAATC------GGGGTTTGGAAGCTGTAA    633


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