Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04254 and BPUM_2556
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_04254___citZ.1.24716.seq
# -bsequence dna-align/BPUM_2556___citZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04254___citZ-BPUM_2556___citZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04254___citZ-BPUM_2556___citZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04254___citZ
# 2: BPUM_2556___citZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1134
# Identity: 852/1134 (75.1%)
# Similarity: 852/1134 (75.1%)
# Gaps: 30/1134 ( 2.6%)
# Score: 3094.5
#
#
#=======================================
BSNT_04254___ 1 ATGACAGCGACACGCGGTCTTGAAGGGGTTGTAGCAACAACATCATCTGT 50
||||||||.|||.|.|||||||||||..||||.||||||||.|||||.||
BPUM_2556___c 1 ATGACAGCAACAAGAGGTCTTGAAGGTATTGTGGCAACAACTTCATCCGT 50
BSNT_04254___ 51 TAGTTCTATTATTGATGATACCCTTACATATGTGGGGTATGATATCGATG 100
.||.||.||||||||||||||.|||||.||.||.|||||..|||||||||
BPUM_2556___c 51 AAGCTCAATTATTGATGATACTCTTACTTACGTAGGGTACAATATCGATG 100
BSNT_04254___ 101 ATTTGACAGAGAATGCAAGTTTTGAAGAAATCATCTACTTGCTTTGGCAT 150
||||.||.||.||.||.|.|||.||||||||..|||||.||.|.|||||.
BPUM_2556___c 101 ATTTAACTGAAAAAGCTACTTTCGAAGAAATTGTCTACCTGTTATGGCAC 150
BSNT_04254___ 151 CTAAGGCTGCCAAACAAAAAAGAGCTTGA-AGAGTTAAAGCAGCAGCTTG 199
.|||.||||||.||..|..|||||| ||| .||||||||.||||||||
BPUM_2556___c 151 TTAAAGCTGCCGAATGAGCAAGAGC-TGAGCGAGTTAAAACAGCAGCT-- 197
BSNT_04254___ 200 CAAAGGAA--GCTGCCGTTCCGCAAGAAATTATTGAGCACTTCAAATCTT 247
|||.|.|| |||..|.|||||||||||||.|||||||||||.|||||.|
BPUM_2556___c 198 CAACGAAAATGCTCACATTCCGCAAGAAATCATTGAGCACTTTAAATCGT 247
BSNT_04254___ 248 ATTCCCTCGAAAATGTTCATCCCATGGCTGCTCTTCGGACAGCAATTTCA 297
||||.||.||....||||||||.|||.||||..||||.|||||..|.||.
BPUM_2556___c 248 ATTCGCTGGATGGGGTTCATCCAATGTCTGCGATTCGTACAGCGGTATCC 297
BSNT_04254___ 298 TTACTAGGCCTGCTTGACAGCGAGGCTGATACCATGAACCCGGAAGCCAA 347
||||||||..|.|||||...|||..|.||.|..|||.||...|||||.||
BPUM_2556___c 298 TTACTAGGATTACTTGATGACGAATCAGAGATTATGGACAAAGAAGCGAA 347
BSNT_04254___ 348 CTACAGAAAGGCGATCCGCCTTCAGGCAAAGGTGCCTGGCCTGGTTGCAG 397
.||||||||.||.||.|||.|.|||||.||..|..||||.||.||.||.|
BPUM_2556___c 348 TTACAGAAAAGCCATTCGCTTACAGGCGAAAATTTCTGGACTAGTCGCTG 397
BSNT_04254___ 398 CGTTTTCCAGAATTCGCAGGGGTCTTGAGCCTGTTGAACCGAGAGAAGAT 447
|.|||||..|.|||||.|.|||.|||||||||||..|.||.|.||||||.
BPUM_2556___c 398 CATTTTCACGTATTCGTAAGGGACTTGAGCCTGTACAGCCAAAAGAAGAA 447
BSNT_04254___ 448 TAC-GGTAT--TGCGGAGAATTTTCTTTACACAT--TAAACGGTGAAGAG 492
||| |.||| ||| ||..||| |||.|.|| ||||.||.||||||
BPUM_2556___c 448 TACAGCTATGCTGC----AAACTTC-TTATATATGCTAAATGGCGAAGAG 492
BSNT_04254___ 493 CCTTCACCAATTGAGGTTGAAGCCTTCAACAAAGCATTGATTTTACATGC 542
|||||||||.|.||..||||.||..|..|.||.|||.|.|||.|||||||
BPUM_2556___c 493 CCTTCACCAGTAGAAATTGAGGCAATTGATAAGGCACTCATTCTACATGC 542
BSNT_04254___ 543 TGACCATGAGTTGAACGCGTCAACGTTCACAGCGAGGGTCTGCGTCGCAA 592
.||.|||||.||.|||||.||.||.||.|||||..|.||.||.||.||.|
BPUM_2556___c 543 GGATCATGAATTAAACGCATCGACATTTACAGCACGTGTATGTGTTGCTA 592
BSNT_04254___ 593 CACTTTCTGACATCTATTCAGGCATTACTGCAGCAATCGGCGCGCTGAAA 642
||||.||.||.|||||.||.||..|.||.||.||.|||||.|||||.|||
BPUM_2556___c 593 CACTATCAGATATCTACTCTGGTGTAACAGCGGCTATCGGTGCGCTAAAA 642
BSNT_04254___ 643 GGGCCTCTTCACGGAGGAGCGAATGAAGGCGTTATGAAAATGCTGACAGA 692
||.||.|||||.||.|||||.||.||||||||.|||||.|||||..||||
BPUM_2556___c 643 GGACCACTTCATGGCGGAGCCAACGAAGGCGTGATGAAGATGCTTTCAGA 692
BSNT_04254___ 693 AATCGGTGAAGTGGAAAACGCTGAGCCGTACATCCGCGCTAAACTTGAAA 742
|||.||.|||||.|||||||..||..|.||.||.|..|.|||.||.||.|
BPUM_2556___c 693 AATTGGCGAAGTTGAAAACGTAGATTCCTATATTCATGGTAAGCTAGAGA 742
BSNT_04254___ 743 AGAAAGAAAAAATCATGGGATTCGGCCACCGTGTGTATAAGCATGGTGAT 792
|||||||||||||.|||||.||.||||||||.||.|||...||.||||||
BPUM_2556___c 743 AGAAAGAAAAAATTATGGGCTTTGGCCACCGCGTATATCGCCAAGGTGAT 792
BSNT_04254___ 793 CCGCGCGCGAAGCATCTGAAAGAAATGAGCAAGCGCCTGACCAACCTGAC 842
|||||.||.||||||||.|||||||||||..||||..|.||.||||||||
BPUM_2556___c 793 CCGCGTGCAAAGCATCTAAAAGAAATGAGTCAGCGTTTAACAAACCTGAC 842
BSNT_04254___ 843 AGGCGAAAGC--AAATGGTATGAGATGTCGATTCGTATAGAAGACATCGT 890
.|||| ||| |||||||||||.|||||..||||...|||.||.|||||
BPUM_2556___c 843 TGGCG--AGCCGAAATGGTATGAAATGTCTGTTCGCGCAGAGGAAATCGT 890
BSNT_04254___ 891 CACATCAGAGAAAAAGCTTCCGCCTAACGTTGATTTCTATTCGGCTTCTG 940
.||||||||||||||.|||||.||.||.||||||||.|||||.||.||||
BPUM_2556___c 891 GACATCAGAGAAAAATCTTCCACCAAATGTTGATTTTTATTCTGCATCTG 940
BSNT_04254___ 941 TATATCACAGCCTCGGTATTGACCATGATTTGTTTACACCGATTTTTGCT 990
||||||||||.||.||.|||||.|||||.|||||.|||||.|||||.| |
BPUM_2556___c 941 TATATCACAGTCTTGGGATTGATCATGACTTGTTCACACCAATTTTCG-T 989
BSNT_04254___ 991 G-TAAGCAGAATGTCCGGCTGGCTCGCTCATATTCTTGAGCAGTATGACA 1039
| |.|||.||.|.||.||.|||.|||||||.|||.|.|||||||||||||
BPUM_2556___c 990 GATCAGCCGATTCTCTGGATGGATCGCTCACATTTTAGAGCAGTATGACA 1039
BSNT_04254___ 1040 ACAACCGTCTGATCCGCCCGCGGGCAGATTACACAGGCCCTGA----CAA 1085
||||||||||.|||||.||..|.||.||.||||..||.||||| |||
BPUM_2556___c 1040 ACAACCGTCTTATCCGTCCAAGAGCTGACTACATTGGACCTGATCTTCAA 1089
BSNT_04254___ 1086 ACAAAAATTCGTTCCGATTGAAGAAAGAGCCTAA 1119
|| .||.||||||||....|||||||.||||
BPUM_2556___c 1090 AC----GTTTGTTCCGATCAGTGAAAGAGACTAA 1119
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