Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04258 and BPUM_2559
See
Amino acid alignment /
Visit
BSNT_04258 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_04258___ytvI.1.24716.seq
# -bsequence dna-align/BPUM_2559___ytvI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04258___ytvI-BPUM_2559___ytvI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04258___ytvI-BPUM_2559___ytvI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04258___ytvI
# 2: BPUM_2559___ytvI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1234
# Identity: 706/1234 (57.2%)
# Similarity: 706/1234 (57.2%)
# Gaps: 233/1234 (18.9%)
# Score: 1635.0
#
#
#=======================================
BSNT_04258___ 1 GTGAATCAATCTTATATCACTATTTTTTTCAGAACCCTCTTTG-TCAT-A 48
||||||||..|.|||||..|.||||||.|..||| .|||| |.|| |
BPUM_2559___y 1 GTGAATCACACCTATATGGCCATTTTTCTACGAA----GTTTGATGATGA 46
BSNT_04258___ 49 TCAATGACCGCAGGGTCGATAGCTGCGG----CCTATTAT-----TCGTT 89
||| |||..| |..||..||||| |.|.|||| ||.||
BPUM_2559___y 47 TCA------GCATTG-CTGTATTTGCGGTTGTCTTTTTATATCAGTCTTT 89
BSNT_04258___ 90 TCCGTTAACTTATCCGTTCCTGATCGCCCTTATTCTTTCTTCAGTGATTC 139
|||.||....|||||.||...|||.||.||||||.|.||.|...|.||||
BPUM_2559___y 90 TCCTTTTTTATATCCTTTTTGGATTGCACTTATTGTCTCCTGCCTTATTC 139
BSNT_04258___ 140 ATCCTGTTGTCGATTATTTGGACAAAGT-GACAG-GATTCCCCCGAA--- 184
|.|||||.| ||| .||||.| || || || ||.||.|||
BPUM_2559___y 140 ACCCTGTCG-----TAT----GCAAAATAGA-AGAGA-TCACCGGAATGC 178
BSNT_04258___ 185 CGATAAATGTTCTGGG--CGTTCTTG-CTTTTT--TTCTGCTC------- 222
|||.| ||| ||||.|.| |.||.| |.||||||
BPUM_2559___y 179 CGAGA--------GGGTTCGTTGTAGTCATTGTACTACTGCTCTTTTTAG 220
BSNT_04258___ 223 --GCAGCCTTCGGCGTCCTTACCATTC-TGGTAGCCGAAATCGTAACGGG 269
..||||..|||..||.|.| ||.|| |.|||||.||||||.|..|.||
BPUM_2559___y 221 TATTAGCCGCCGGTTTCATCA-CACTCTTAGTAGCTGAAATCATCTCAGG 269
BSNT_04258___ 270 AACAGCCTATCTAGCAAAAACGCTGCCTCCGCATATCAG--CACGTTTAT 317
||..||.|||.|.|||||....||.||| | |||.||.||
BPUM_2559___y 270 AAGTGCTTATTTGGCAAAGGTTCTACCT----------GGTCACCTTGAT 309
BSNT_04258___ 318 ---TTCAT----ATTG-CGAAAAATTGTTTACAACTCATATTCAGCCGCT 359
.|||| |||| ||||...||.||||||..|.|.||.|.|||..|
BPUM_2559___y 310 CAAATCATTGGGATTGTCGAACGTTTTTTTACAGATAAGATCCTGCCTTT 359
BSNT_04258___ 360 CTA--------TAA-----CGAGTTAACTCTTTTGTTTCAAGAATTGG-- 394
.|| ||| |.|.|||| |..|.|.||||.| ||
BPUM_2559___y 360 GTACCATGATGTAACCGCCCAATTTAA----TACGCTGCAAGCA--GGGC 403
BSNT_04258___ 395 -AAACGAACCAGCAGGCTTCCATCGTCACT-------CATATCCAGACAC 436
|||.||| |||.| ||.|||||..|.|
BPUM_2559___y 404 AAAAGGAA-----------------TCAATTTTGGGACAAATCCAAGCGC 436
BSNT_04258___ 437 TCGGAGAT---TCTGCCGCTAAAAAT-GCCGGGCTCCTGCTGTCCCACAT 482
|.||.||| .||||.|| |||||| | ||.|| .|.||.||..|.|.
BPUM_2559___y 437 TGGGCGATGAAGCTGCTGC-AAAAATAG--GGACT-TTTCTTTCAAAAAC 482
BSNT_04258___ 483 TCTAGAGATGATCCCGAGATTTTTCGCTCTTCTTCCCAATACGGCGGCGG 532
|||.|||.|.||||||...|||||.|.||||.|.||..||.|.||.||..
BPUM_2559___y 483 TCTCGAGCTTATCCCGGCTTTTTTAGGTCTTTTGCCTGATGCAGCCGCAA 532
BSNT_04258___ 533 TTCTGATTTTTTCTCTTCTGGCAACCTTTTTTATGACAAAGGATTGG--- 579
..||..|.||||||...|||||.||.||||||||.||.||.||||||
BPUM_2559___y 533 CCCTTTTGTTTTCTGCACTGGCGACTTTTTTTATTACGAAAGATTGGTTT 582
BSNT_04258___ 580 -CA-TAAGCTGAAAGCCATGCTTGTTTTAATTCTGCCGGATCGTG--TGA 625
|| ||| |||...|||.||.|..||..|.|.|||.|...|| ||
BPUM_2559___y 583 ACATTAA----AAAAATATGGTTCTCGTATCTTTCCCGCAAAATGGATG- 627
BSNT_04258___ 626 CAGCTAACAGCAAAGCGATCAGCAGC----------GAATTAAAAAAAGC 665
|||||.| ||..||| |||.|.||||||||
BPUM_2559___y 628 -------CAGCATA-----CACGAGCCATTTTATCTGAAATCAAAAAAGC 665
BSNT_04258___ 666 AATGACTGGTTTTATCAAAGCACAAGC-CGTCCTCGTTTTCATCACGATG 714
.||.||.||||||||.||.||.| ||| ..|.||.|||..|||.||.||.
BPUM_2559___y 666 CATTACCGGTTTTATGAAGGCGC-AGCTTTTGCTTGTTGCCATGACCATT 714
BSNT_04258___ 715 GTGATTGTATTTATCGGCCT-TTCTCTCTTAAAGGTTGAACACGCCGCAA 763
|...||||..|.||.||.|| .|| .|||||||.||.||.||||||
BPUM_2559___y 715 GGCCTTGTCATCATTGGACTGATC-ATCTTAAAAGTCGAGCACGCC---- 759
BSNT_04258___ 764 C----AATTGCTTTTTTAATCGGGCTTGTAGATCTTCTCCCTTACTTAGG 809
| .||||||||.|..||.|||.||||.|||.|.||.|||||..|.||
BPUM_2559___y 760 CTTGTCATTGCTTTATGTATTGGGTTTGTCGATTTACTTCCTTATATCGG 809
BSNT_04258___ 810 TGCCGGCTCCGTATTTGTGCCCTGGATTTTGTATTTA----TCGATTACG 855
...||||.|.||.|||.||||.||||| .||||| .|.||.||.
BPUM_2559___y 810 GAGCGGCACTGTTTTTCTGCCATGGAT----CATTTACTCCGCCATGACA 855
BSNT_04258___ 856 GGCCAGCTGCCCCAAGCGATCGGAATCGGTATCCTGTACCTCGTCGTTCT 905
|||.|.||..|.|..||.||.||..||||.||..|.||..|.|||||.||
BPUM_2559___y 856 GGCAACCTTTCACTCGCCATTGGGCTCGGCATTTTATATATTGTCGTGCT 905
BSNT_04258___ 906 TATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGA 955
.|||||..|.||..|..|||||||.||..|..||||.|||||.||.||..
BPUM_2559___y 906 CATTCAAAGACAAATTTCAGAGCCAAAAGTCTTAAGCAAATCCATTGGAC 955
BSNT_04258___ 956 TCGATCCGCTGGCAACGCTCATCGCCCTGTTTGCCGGCTTTAAATTATTC 1005
|..||||..|.||.||||||.|.||.||.||||.|||.||.||||..|||
BPUM_2559___y 956 TTAATCCTTTAGCTACGCTCGTGGCGCTATTTGTCGGGTTAAAATGGTTC 1005
BSNT_04258___ 1006 GGGTTTTTAGGAC---TGATTGCGGGACCCGCTGTACTC----GTCATCA 1048
||.||..|.|||| |.||| ||.||.|| ||| |||.|..
BPUM_2559___y 1006 GGTTTCCTTGGACTCGTCATT---GGCCCTGC----CTCCCTTGTCGTGT 1048
BSNT_04258___ 1049 TCCAAGC-TTTCATCACAA--CAGGCGCATTAAAAGAAATATGGTCCTAT 1095
..||||| ||||.| || ||||.|..||.|..||.|| ||||
BPUM_2559___y 1049 GGCAAGCATTTCGT---AATGCAGGTGTTTTTAGCGATAT------CTAT 1089
BSNT_04258___ 1096 ATCACCGTTCA-------------GCAAAAATAA 1116
|.||.|| ||||||.|||
BPUM_2559___y 1090 ----CAGTACATTCGGTACGGCATGCAAAAGTAA 1119
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.