Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04261 and BPUM_2560

See Amino acid alignment / Visit BSNT_04261 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_04261___fxsA.1.24716.seq
#    -bsequence dna-align/BPUM_2560___fxsA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04261___fxsA-BPUM_2560___fxsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04261___fxsA-BPUM_2560___fxsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04261___fxsA
# 2: BPUM_2560___fxsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 423
# Identity:     254/423 (60.0%)
# Similarity:   254/423 (60.0%)
# Gaps:          72/423 (17.0%)
# Score: 702.5
# 
#
#=======================================

BSNT_04261___      1 ATGAGATTATTG------TTTTTGCT--TTTTATTG----TGTTTCCGGC     38
                              |||      |.||||||  |.||||||    ||||.||.||
BPUM_2560___f      1 ---------TTGAAAAAATATTTGCTACTATTATTGATTCTGTTCCCTGC     41

BSNT_04261___     39 AATAGAAATCGGCATATTCCTATTTTTAGGCAAGCTGATTGGCATTTTAC     88
                     |.|.||||||.|..||||..||.|.|.|.|.||..|.|||||||||||.|
BPUM_2560___f     42 AGTGGAAATCAGTTTATTTTTAATATCAAGTAAAATCATTGGCATTTTGC     91

BSNT_04261___     89 CGACAGTTCTATTCATGATTCTGAC--GGGCATTATCGGCGC--AGCAGC    134
                     |.||..|.||.||.||..|.||.||  |.||||||  |||||  |    |
BPUM_2560___f     92 CAACGATGCTGTTGATCGTACTCACGAGTGCATTA--GGCGCTTA----C    135

BSNT_04261___    135 --TGCAAAAAAACAAGGAACCGAAGTGTATTATAAGGTTCAGCGTGATCT    182
                       |||||.|||.|||||||..||||..|.|.|.||.||.||..|.|||.|
BPUM_2560___f    136 TTTGCAAGAAAGCAAGGAATTGAAGCTTTTCAAAAAGTGCAAAGAGATTT    185

BSNT_04261___    183 TCAATATGGCAAAATGCCGGGAGAAGCGATTGCTGACGGTCTGTGCATTT    232
                     .|||||||||||||||||.||.|.|.||||.|.|||.|||.|.||||||.
BPUM_2560___f    186 ACAATATGGCAAAATGCCAGGGGTAACGATAGTTGATGGTTTTTGCATTC    235

BSNT_04261___    233 TCATTGGCGGTCTATTGCTGATGCTTCCGGGCTTTTTATCAGATTTGGCC    282
                     |.||.||.||.||..|||||.|..|.||.|||||.|||||.|||.|...|
BPUM_2560___f    236 TAATCGGTGGCCTGCTGCTGCTCATCCCCGGCTTCTTATCGGATATCATC    285

BSNT_04261___    283 GGCGC-CTGTCTTCTTATCCCGTTTACCCGCGGCTGGTGTAAGCCGAT--    329
                     ||.|| ||| ||.||.||.|||.|.||         |.|.||||..||  
BPUM_2560___f    286 GGTGCGCTG-CTGCTCATTCCGATGAC---------GAGAAAGCAAATCA    325

BSNT_04261___    330 ----TCTGTTCAAA---TGGCTGAGAGGTATGTCGAAGAATAAGCGGATC    372
                         .||.||..||   |||||.|||...|||||      |||.||.|  
BPUM_2560___f    326 AGCCGCTTTTTGAACGCTGGCTTAGAAACATGTC------TAATCGCA--    367

BSNT_04261___    373 ATC---ATCAAATAA--------    384
                     |||   ||..|||.|        
BPUM_2560___f    368 ATCGCTATACAATTATTCGCTAA    390


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