Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04266 and BPUM_2563

See Amino acid alignment / Visit BSNT_04266 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:48
# Commandline: needle
#    -asequence dna-align/BSNT_04266___accA.1.24716.seq
#    -bsequence dna-align/BPUM_2563___accA2.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04266___accA-BPUM_2563___accA2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04266___accA-BPUM_2563___accA2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04266___accA
# 2: BPUM_2563___accA2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 991
# Identity:     745/991 (75.2%)
# Similarity:   745/991 (75.2%)
# Gaps:          26/991 ( 2.6%)
# Score: 2737.0
# 
#
#=======================================

BSNT_04266___      1 GTGGCTCCAAGATTAGAATTTGAAAAACCGGTGATTGAACTGCAAACCAA     50
                     ||||||..|..|.||||||||||||||||.||.||||||||.|.|.|.||
BPUM_2563___a      1 GTGGCTGGAGAACTAGAATTTGAAAAACCTGTCATTGAACTTCGAGCGAA     50

BSNT_04266___     51 AATCGCCGAACTAAAAAAATTCACCCAAGATTCCGATATGGATCTAAGTG    100
                     |||.|..|||||||||||.|||||.|||.|.||.||.||||||.||||||
BPUM_2563___a     51 AATTGATGAACTAAAAAAGTTCACACAAAACTCAGAAATGGATTTAAGTG    100

BSNT_04266___    101 CGGAAATCGAACGGCTCGAAGAC-CGTCT-CGCTAAGCTTCAGGATGATA    148
                     |.|||||.||.||.||.||| || ||||| .|| ||.|||.|.|..||.|
BPUM_2563___a    101 CAGAAATTGAGCGTCTTGAA-ACACGTCTGAGC-AAACTTGAAGCAGACA    148

BSNT_04266___    149 TTTACAAAAATCTGAAGCCATGGGACCGGGTTCAAATCGCGCGTCTGGCG    198
                     ||||.|.||||.|.|||||.||||||.|.||.||.||.||.||||..|||
BPUM_2563___a    149 TTTATACAAATTTAAAGCCGTGGGACAGAGTACAGATTGCTCGTCATGCG    198

BSNT_04266___    199 GACCGTCCGACAACTCTTGATTATATCGAACACCTGTTTACCGACTTTTT    248
                     ...||.||.||||||||.|||||.||..||.|.||||||..|.|||||||
BPUM_2563___a    199 ATGCGCCCAACAACTCTCGATTACATTCAAGAGCTGTTTGACAACTTTTT    248

BSNT_04266___    249 TGAATGTCACGGAGACAGAGCG----TACGGGGACGATGAAGCCATTGTC    294
                     .||.||||||||.|||    ||    ||.|||||.||||||||.||.||.
BPUM_2563___a    249 CGAGTGTCACGGTGAC----CGTTTTTATGGGGATGATGAAGCGATCGTT    294

BSNT_04266___    295 GGCGGGATTGCGAAGTTCCACGGCCTCCCTGTAACGGTAATCGGGCATCA    344
                     ||.||.|||||.|.|||..|.||.||.|||||.||.||.||.||.|||||
BPUM_2563___a    295 GGAGGAATTGCCACGTTTAAAGGGCTTCCTGTTACAGTGATTGGCCATCA    344

BSNT_04266___    345 GCGCGGCAAAGACACGAAGGAAAACCTAGTCCGCAATTTTGGGATGCCGC    394
                     ||||||.|||||.||.||.||||||.|...|||.|||||.||.|||||.|
BPUM_2563___a    345 GCGCGGTAAAGATACAAAAGAAAACTTGCGCCGTAATTTCGGAATGCCTC    394

BSNT_04266___    395 ATCCAGAAGGCTACAGAAAAGCGCTTCGTCTGATGAAACAGGCTGACAAA    444
                     ||||||||||||||.|.||||||||.||..||||||||||.||.||.|||
BPUM_2563___a    395 ATCCAGAAGGCTACCGTAAAGCGCTGCGCTTGATGAAACAAGCAGATAAA    444

BSNT_04266___    445 TTTAACAGACCAATTATCTGTTTTATTGATACGAAGGGGGCATACCCCGG    494
                     |||||..|.||.||.||.||.|||||||||||.||.||.||.||.||.||
BPUM_2563___a    445 TTTAATCGTCCGATCATTTGCTTTATTGATACAAAAGGAGCTTATCCTGG    494

BSNT_04266___    495 ACGAGCAGCTGAAGAAAGAGGACAAAGTGAAGCTATTGCCAAAAACCTGT    544
                     ...|||||||||||||.|.||.|||||||||||.|||||.||||||||.|
BPUM_2563___a    495 TAAAGCAGCTGAAGAACGTGGGCAAAGTGAAGCAATTGCGAAAAACCTAT    544

BSNT_04266___    545 TTGAGATGGCCGGCCTTCGAGTGCCTGTTATCTGCATCGTCATCGGTGAA    594
                     |.||.|||||.||.|||||.||.||.|||.||||.||.|||||.||||||
BPUM_2563___a    545 TCGAAATGGCAGGACTTCGTGTACCGGTTGTCTGTATTGTCATTGGTGAA    594

BSNT_04266___    595 GGCGGAAGCGGCGGAGCCCTTGGTCTGGGTGTAGGTAATCACTTGCATAT    644
                     ||||||||.|||||.||.||.||..|.||.|||||.||.|||.|..|.||
BPUM_2563___a    595 GGCGGAAGTGGCGGCGCACTAGGCTTAGGCGTAGGAAACCACCTATACAT    644

BSNT_04266___    645 GCTGGAAAACTCTACTTATTCTGTTATTTCTCCGGAAGGTGCCGCGGCAC    694
                     |||.||.||.||.||.|||||.||.|||||.||.||||||||.||.||||
BPUM_2563___a    645 GCTAGAGAATTCAACGTATTCAGTGATTTCACCTGAAGGTGCAGCAGCAC    694

BSNT_04266___    695 TTTTATGGAAGGACTC--CAGTCTTGCTAAAAAAGCAGCAGAAACAATGA    742
                     |..|.|||||||||||  ||  |||||.||||||||.||||||.||||||
BPUM_2563___a    695 TGCTCTGGAAGGACTCATCA--CTTGCGAAAAAAGCTGCAGAATCAATGA    742

BSNT_04266___    743 AAATCACTGCGCCGGATTTAAAAGAATTAGGTATTATAGATCATATGATT    792
                     |.||.||.||.||.||..||||||||||||.||||||||||.||.|.|||
BPUM_2563___a    743 AGATTACGGCTCCAGACCTAAAAGAATTAGATATTATAGATGATGTTATT    792

BSNT_04266___    793 AAAGAAGTAAAAGGCGGAGCGCACCATGATGTGAAGCTGCAGGCAAGCTA    842
                     ||||||||..||||.|||||.||.|..||.|||||.|..||.|||..|||
BPUM_2563___a    793 AAAGAAGTGCAAGGTGGAGCACATCGAGACGTGAAACAACAAGCAGCCTA    842

BSNT_04266___    843 TATGGACGAAACCCTTAAACAATCGTTAAAAACTTTGCTGAAGCTGAGCG    892
                     .||.||..||||..|.|||||.||..|.|.|.|||||||.||.||     
BPUM_2563___a    843 CATTGAAAAAACATTAAAACAGTCACTTACATCTTTGCTCAAACT-----    887

BSNT_04266___    893 AA-----GAAGAATTAGTTCAGCAGCGCTATGAAAAATATAAAGCAATTG    937
                     ||     ||||||.||||..|.||..|.|||.|||||||.||||||||.|
BPUM_2563___a    888 AACACCTGAAGAACTAGTCGAACAAAGATATCAAAAATACAAAGCAATCG    937

BSNT_04266___    938 GCAAAGTCTCGGTTGAAGATCAATATATCGGGGTAAACTAA    978
                     |.|||||.|||||||||.||||||||||.||||||||||||
BPUM_2563___a    938 GGAAAGTATCGGTTGAAAATCAATATATTGGGGTAAACTAA    978


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