Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04267 and BPUM_2564

See Amino acid alignment / Visit BSNT_04267 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:48
# Commandline: needle
#    -asequence dna-align/BSNT_04267___accD.1.24716.seq
#    -bsequence dna-align/BPUM_2564___accD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04267___accD-BPUM_2564___accD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04267___accD-BPUM_2564___accD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04267___accD
# 2: BPUM_2564___accD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 891
# Identity:     666/891 (74.7%)
# Similarity:   666/891 (74.7%)
# Gaps:          33/891 ( 3.7%)
# Score: 2393.5
# 
#
#=======================================

BSNT_04267___      1 TTGT---TAAAGGATATATTCACGAAAAAGAAAAAGTATGCTTCCGTACC     47
                     ||||   |.||..||||.||||..|||||||||||.|||||.||.|||||
BPUM_2564___a      1 TTGTCAATCAAAAATATTTTCAGTAAAAAGAAAAAATATGCATCTGTACC     50

BSNT_04267___     48 ATCTGAACAAGCGAAG-CACGATGTTCCGGAAGGCATTATGACAAAATGT     96
                     .||||||||.|| ||| ||.|||||.||.||||||||.|||||.||||||
BPUM_2564___a     51 CTCTGAACAGGC-AAGTCAAGATGTGCCTGAAGGCATCATGACCAAATGT     99

BSNT_04267___     97 CCTAAGTGTAAAAAAATCATGCTCACTAAAGAGTTGGATAAAAATATGCG    146
                     ||..|.|||||||||||.||||||||.|||||..|.|||||||||.|.||
BPUM_2564___a    100 CCGCAATGTAAAAAAATAATGCTCACCAAAGAACTAGATAAAAATTTACG    149

BSNT_04267___    147 GGTATGCATGAACTGCGATTATCATTTCCCAATGAACGCAAAACAGCGTA    196
                     .||.||||||||.||||.....|||||.|.||||||.|||||||||||||
BPUM_2564___a    150 TGTTTGCATGAATTGCGGCCGGCATTTGCAAATGAATGCAAAACAGCGTA    199

BSNT_04267___    197 TCGAAAG-CTTGATGGATGAAAAATCCTTTGAGGAATTTAATCAGGGAA-    244
                     |.||.|| |||| |.||.|||....|.|||||.||||||||  .|||.| 
BPUM_2564___a    200 TTGACAGCCTTG-TTGACGAAGGCACATTTGAAGAATTTAA--CGGGCAC    246

BSNT_04267___    245 -TGCTCTCGGAAAATCCGCTTGGTTTCCCGGGATATCTGGAAAAGCTTGA    293
                      ||.||||.|||||.|||||.||.|||||.||.||....|||||||||||
BPUM_2564___a    247 CTGATCTCAGAAAACCCGCTCGGATTCCCAGGCTACGAAGAAAAGCTTGA    296

BSNT_04267___    294 AAAAGATCGCGAGAAAACATCCTTAAACGAGGCTGTTGTGACAGG-CAAG    342
                     .|||||..|.||.|||||.||.||.||.||.||..||||.||||| ||||
BPUM_2564___a    297 GAAAGACAGAGAAAAAACGTCTTTGAATGAAGCCATTGTCACAGGTCAAG    346

BSNT_04267___    343 G-GCACCATCGGCGGACACCCG-GCTGTTGTCGCCGTCATGGACTCTTCA    390
                     | |.|  ||.|..|| ||..|| |||||..|.||.||||||||..|..||
BPUM_2564___a    347 GTGAA--ATTGAAGG-CAAGCGTGCTGTGATTGCTGTCATGGATGCCACA    393

BSNT_04267___    391 TTCAGAATGGGCAGCATGGGTTCAGTCGTCGGTGAAAAAATCACGCTTGC    440
                     |||.|.||||||||||||||.|||||.||.||||||||.|||||.|||||
BPUM_2564___a    394 TTCCGTATGGGCAGCATGGGCTCAGTTGTGGGTGAAAAGATCACACTTGC    443

BSNT_04267___    441 GATTGAAAAAGCAAAAGCTGATAAAGTTCCGTTTATTATTTTTACGGCTT    490
                     ||||||.|||||||||||.||.||.||.||.|||||.||.|||||.||.|
BPUM_2564___a    444 GATTGAGAAAGCAAAAGCGGACAAGGTGCCATTTATCATCTTTACTGCAT    493

BSNT_04267___    491 CAGGCGGCGCTAGAATGCAGGAAGGCGTATTAAGTTTGATGCAGATGGCT    540
                     |||||||.||.||||||||.||.||..|..|.|||.|.|||||||||||.
BPUM_2564___a    494 CAGGCGGAGCGAGAATGCAAGAGGGGATTCTCAGTCTTATGCAGATGGCA    543

BSNT_04267___    541 AAGACAAGCTCTGCGTTAAAACTGTTCAGTGAAGAACAGGGTCTTATTAT    590
                     ||.|||||.||.||.|||||||||||||||||.||.||.|||.|.|||||
BPUM_2564___a    544 AAAACAAGTTCAGCATTAAAACTGTTCAGTGAGGACCAAGGTTTGATTAT    593

BSNT_04267___    591 TTCAGTAATGACGCATCCGACTACCGGGGGCGTATCAGCAAGCTTTGCAT    640
                     .||.||.||||||.|.||.||.||.||.||.||||||||.||.||.||.|
BPUM_2564___a    594 CTCTGTGATGACGAACCCAACAACTGGCGGAGTATCAGCTAGTTTCGCGT    643

BSNT_04267___    641 CCCTTGGCGATTACAATTTCGCTGAGCCTGGCGCGCTGATCGGTTTTGCC    690
                     |.|||||.||||||||.||.||.||.|||||.||..|.||.||.|||||.
BPUM_2564___a    644 CTCTTGGTGATTACAACTTTGCAGAACCTGGTGCTTTAATTGGGTTTGCA    693

BSNT_04267___    691 GGAAGACGGATTATTGAACAGACAATAGGAGAAAAACTGCCTGAGGACTT    740
                     ||..|..|.||.||||||||.|||||..|.|||.|.|||||.||||||||
BPUM_2564___a    694 GGTCGTAGAATCATTGAACAAACAATTCGTGAAGACCTGCCAGAGGACTT    743

BSNT_04267___    741 CCAAACGGCTGAATTTTTATTAAAACATGGACAGCTTGATGCGGTTATTC    790
                     ||||||||||||||||||..|.||.|||||.|||||.|||||.||.||||
BPUM_2564___a    744 CCAAACGGCTGAATTTTTGCTGAAGCATGGGCAGCTGGATGCTGTCATTC    793

BSNT_04267___    791 ATCGCGACGATATGAAAAAAACGTTAGAAAATCTGCTGGATAT--GCATC    838
                     ||||.|..||.||||||.||||.||||       ||.|.||.|  ||| |
BPUM_2564___a    794 ATCGTGCAGAGATGAAAGAAACATTAG-------GCCGAATCTTAGCA-C    835

BSNT_04267___    839 AA------ACAGGAGGTGACATTGAGTGGCTCCAAGATTAG    873
                     .|      |||||||||||....||||||||..|..|.|||
BPUM_2564___a    836 TACACAGCACAGGAGGTGAACGAGAGTGGCTGGAGAACTAG    876


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04267 and BPUM_2564

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
