Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04268 and BPUM_2565
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:48
# Commandline: needle
# -asequence dna-align/BSNT_04268___ytsJ.1.24716.seq
# -bsequence dna-align/BPUM_2565.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04268___ytsJ-BPUM_2565.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04268___ytsJ-BPUM_2565.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04268___ytsJ
# 2: BPUM_2565
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1237
# Identity: 999/1237 (80.8%)
# Similarity: 999/1237 (80.8%)
# Gaps: 8/1237 ( 0.6%)
# Score: 4033.0
#
#
#=======================================
BSNT_04268___ 1 ATGTCATTAAGAGAAGAAGCATTACACCTGCATAAAGTCAACCAGGGGAA 50
||||||||||||||||||||||||||..||||.||||..||.||.||.||
BPUM_2565 1 ATGTCATTAAGAGAAGAAGCATTACATATGCACAAAGAGAATCAAGGCAA 50
BSNT_04268___ 51 ACTGGAGTCTAAATCAAAAGTAGAGGTCAGAAATGCAAAAGATCTAAGCC 100
|||.||.||.||||||||||||.|.||.|.||||||.|||||..|.|||.
BPUM_2565 51 ACTTGAATCAAAATCAAAAGTACAAGTGAAAAATGCGAAAGACTTGAGCT 100
BSNT_04268___ 101 TCGCTTATTCTCCGGGTGTTGCAGAACCGTGTAAGGATATTCATGAAGAC 150
|.|||||.||.||.||||||||||||||.|||||.||||||.||||.|||
BPUM_2565 101 TGGCTTACTCACCTGGTGTTGCAGAACCATGTAAAGATATTTATGACGAC 150
BSNT_04268___ 151 ATTAACAAAGTATATGATTATACAATGAAGGGGAACATGGTAGCAGTTGT 200
|..|.||||||.|||||||||||||||||.||.||.|||||.||.|||||
BPUM_2565 151 ACAAGCAAAGTGTATGATTATACAATGAAAGGCAATATGGTCGCTGTTGT 200
BSNT_04268___ 201 AACTGACGGTACAGCTGTGCTTGGCCTTGGAAACATCGGCCCTGAAGCGG 250
.||.|||||.|..|||||..|.||.||||||||.||.||..|.|||||..
BPUM_2565 201 CACAGACGGAAGCGCTGTTTTAGGGCTTGGAAATATTGGTGCAGAAGCAT 250
BSNT_04268___ 251 CGCTTCCTGTTATGGAAGGGAAAGCAGTTCTTTTCAAAAGCTTTGCGGGC 300
|.|||||.||.||||||||.|||||.||.||.|||||||||||.||.|||
BPUM_2565 251 CTCTTCCAGTAATGGAAGGAAAAGCTGTACTATTCAAAAGCTTCGCTGGC 300
BSNT_04268___ 301 GTAGATGCGTTCCCGATTGCTTTAAACACAAACGATGTTGATAAAATCGT 350
||.|||||.|||||.|||||..|....||||||||||||||.||||||||
BPUM_2565 301 GTTGATGCCTTCCCAATTGCGCTTGCGACAAACGATGTTGACAAAATCGT 350
BSNT_04268___ 351 TGAAACTGTAAAATTGCTGGAACCGACATTTGGCGGCGTCAACCTTGAAG 400
||||||.||.||..|.||.||.||.||.||||||||.|||||||||||||
BPUM_2565 351 TGAAACAGTCAAGCTTCTTGAGCCAACGTTTGGCGGTGTCAACCTTGAAG 400
BSNT_04268___ 401 ATATTGCAGCGCCAAACTGCTTTATCATTGAAGAGCGCCTCAAAAAAGAA 450
||||||||||.|||||||||||.||.||.|||||||||.|.||||||||.
BPUM_2565 401 ATATTGCAGCTCCAAACTGCTTCATTATCGAAGAGCGCTTGAAAAAAGAG 450
BSNT_04268___ 451 ACAAACATCCCGGTTTTCCATGATGATCAGCACGGTACTGCCATTGTAAC 500
||||||||.||.||.|||||.||||||||||||||.||.||.|||||.||
BPUM_2565 451 ACAAACATTCCAGTGTTCCACGATGATCAGCACGGAACAGCGATTGTGAC 500
BSNT_04268___ 501 CGTAGCAGGTCTTGTGAACGCGCTGAAACTGTCTGGAAAATCCATGTCAT 550
.||||||||.|||||.||.|||||||||||||||||||||||.|||||.|
BPUM_2565 501 AGTAGCAGGACTTGTAAATGCGCTGAAACTGTCTGGAAAATCAATGTCCT 550
BSNT_04268___ 551 CCATTAAAGTTGTCGCAAACGGCGCGGGTGCGGCTGGCATTGCGATTATC 600
|.||.|||||.||.|||||||||||.||.||.||.||.|||||.||||||
BPUM_2565 551 CTATCAAAGTGGTAGCAAACGGCGCTGGAGCCGCGGGAATTGCAATTATC 600
BSNT_04268___ 601 AAGCTTCTTCATCATTATGGCGTTCGCGACATTGTGATGTGCGATTCCAA 650
||||||||..||||||..||.||.||.||.||..|.|||||.|||.|.||
BPUM_2565 601 AAGCTTCTATATCATTTCGGTGTACGTGATATCATCATGTGTGATACAAA 650
BSNT_04268___ 651 AGGGGCCATTTATGAAGGGCGCCCGAACGGCATGAACGATGTCAAAAATG 700
|||.||.|||||.|||||.|||||||||||.|||||.|..||.|||||||
BPUM_2565 651 AGGCGCAATTTACGAAGGCCGCCCGAACGGTATGAATGCAGTGAAAAATG 700
BSNT_04268___ 701 AAGTGGCGAAGTTCACGAACCAAGATCGCAAAGACGGTTCTCTGAAAGAT 750
||||.||.||.||||||||||||||.||.|||||.|||||..|..||||.
BPUM_2565 701 AAGTAGCTAAATTCACGAACCAAGACCGTAAAGAAGGTTCATTAGAAGAA 750
BSNT_04268___ 751 GTCATCATTGA---TGCTGACGTATTTATCGGTGTCTCTGTAGCAGGCGC 797
| |.||||| .||||||||.||.|||||.||.||.|||||.|||||
BPUM_2565 751 G---TGATTGAAGGCGCTGACGTTTTCATCGGAGTTTCAGTAGCGGGCGC 797
BSNT_04268___ 798 GTTAACAAAAGAAATGGTTCAAAGCATGGCAAAAGATCCGATTATCTTTG 847
.||||||||||||||||||..||..||||||||||||||..|.|||||.|
BPUM_2565 798 TTTAACAAAAGAAATGGTTGGAAAAATGGCAAAAGATCCTGTCATCTTCG 847
BSNT_04268___ 848 CAATGGCAAATCCAAATCCGGAAATCATGCCGGAAGATGCGCGTGAAGCC 897
|||||||.|||||.|||||.||.||.|||||.||||||||.|.||.|||.
BPUM_2565 848 CAATGGCGAATCCTAATCCAGAGATTATGCCAGAAGATGCACATGCAGCA 897
BSNT_04268___ 898 GGAGCAAGCGTTATCGGAACTGGCCGTTCTGACTTCCCGAACCAAGTAAA 947
||.|||||.|||.|.|||||||||||||||||||||||||||||||||||
BPUM_2565 898 GGCGCAAGTGTTGTAGGAACTGGCCGTTCTGACTTCCCGAACCAAGTAAA 947
BSNT_04268___ 948 CAATGTTCTTGCATTCCCTGGTATTTTCCGCGGAGCACTTGATGTGCGTG 997
|||.||.|||||||||||.||.|||||||||||||||.|.|||||.||||
BPUM_2565 948 CAACGTACTTGCATTCCCAGGAATTTTCCGCGGAGCATTAGATGTACGTG 997
BSNT_04268___ 998 CCACTCATATTAACGAGGAAATGAAAATCGCAGCGGTTGAAGCCATTGCT 1047
|.|||||.||||||||.|||||||||||.|||||.||.|||||.||||||
BPUM_2565 998 CAACTCACATTAACGAAGAAATGAAAATTGCAGCCGTAGAAGCAATTGCT 1047
BSNT_04268___ 1048 TCACTGGTTTCAGAAGATGAGCTTAGC-GCAGATTATGTCATCCCTGCAC 1096
||.||.||||||||.||| |..||..| ||.||.||.||||||||.|.||
BPUM_2565 1048 TCGCTTGTTTCAGATGAT-AAATTGTCAGCTGAATACGTCATCCCAGAAC 1096
BSNT_04268___ 1097 CGTTTGATAAACGTGTTGCGCCTGCTGTTGCGAAGGCTGTGGCAAAAGCT 1146
|.||||||..||||||.||.||.||.||.||.||.||.||.||||||||.
BPUM_2565 1097 CATTTGATGCACGTGTAGCACCAGCGGTAGCAAAAGCAGTAGCAAAAGCA 1146
BSNT_04268___ 1147 GCGATGGAAACAGGTGTTGCAAGAATCACTGTTGACCCTGAGGAAGTCGC 1196
||.||||||||.||.|||||||||||||..||.|||||.||.||||||||
BPUM_2565 1147 GCAATGGAAACTGGCGTTGCAAGAATCAAAGTCGACCCAGAAGAAGTCGC 1196
BSNT_04268___ 1197 AGAAAAAACAAGAAAACTTACGATTATTGGTGAATAA 1233
.|||||||||||||||.|.||||||||.||.||||||
BPUM_2565 1197 TGAAAAAACAAGAAAATTAACGATTATCGGCGAATAA 1233
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