Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04273 and BPUM_2570

See Amino acid alignment / Visit BSNT_04273 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:49
# Commandline: needle
#    -asequence dna-align/BSNT_04273___ytqI.1.24716.seq
#    -bsequence dna-align/BPUM_2570___ytqI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04273___ytqI-BPUM_2570___ytqI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04273___ytqI-BPUM_2570___ytqI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04273___ytqI
# 2: BPUM_2570___ytqI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 969
# Identity:     715/969 (73.8%)
# Similarity:   715/969 (73.8%)
# Gaps:          54/969 ( 5.6%)
# Score: 2560.0
# 
#
#=======================================

BSNT_04273___      1 ATGAAAACAGAATTGATCAGAACCATATCATTATATGACACGATTATCTT     50
                     |||||||.||||.||||.|||||||||||||||||||||||.||.|||.|
BPUM_2570___y      1 ATGAAAAAAGAACTGATTAGAACCATATCATTATATGACACCATCATCAT     50

BSNT_04273___     51 ACATAGACATGTGCGTCCTGATCCGGATGCCTACGGATCACAGTGCGGGC    100
                     .|||||||||||..|.||.|||||.||||||||.||||||||||||||.|
BPUM_2570___y     51 TCATAGACATGTAAGACCAGATCCTGATGCCTATGGATCACAGTGCGGCC    100

BSNT_04273___    101 TTACGGAAATCCTGCGTGAAACATATCCTGAAAAAAATATTTTTGCGGTC    150
                     |||||||||||.||||||..||.|||||.|||||||||||||.||||...
BPUM_2570___y    101 TTACGGAAATCTTGCGTGCCACCTATCCAGAAAAAAATATTTATGCGACG    150

BSNT_04273___    151 GGCACGCCTGAACCGTCCCTCTCTTTCTTATATTCCCTTGATGAGGTGGA    200
                     ||.||.||.||.||..||||.||.||.||.|||...||||||||.|||..
BPUM_2570___y    151 GGAACACCGGAGCCAACCCTTTCATTTTTGTATGAACTTGATGAAGTGCC    200

BSNT_04273___    201 CAATGA----AACATATGAAGGCGCACTTGTCATTGTCTGCGATACGGCA    246
                     ..||||    .|||    ||||.|||||||||||||||||||||||.||.
BPUM_2570___y    201 GGATGACGTGTACA----AAGGGGCACTTGTCATTGTCTGCGATACAGCC    246

BSNT_04273___    247 AATCAGGAAAGAATCGACGATCAGCGTTATCCTTCA---GGCGCCAAACT    293
                     |||||.|.||||||.|||||||||||.||   ||||   ||||..||.||
BPUM_2570___y    247 AATCAAGCAAGAATTGACGATCAGCGCTA---TTCAATGGGCGATAAGCT    293

BSNT_04273___    294 AATGAAAATCGACCACCATCCGAACGAAGATCCATACGGTGACCTTCTCT    343
                     .||||||||.|||||.|||||.||.||||||||.||.|||||..|.||.|
BPUM_2570___y    294 GATGAAAATTGACCATCATCCAAATGAAGATCCGTATGGTGATTTGCTTT    343

BSNT_04273___    344 GGGTCGATACA-AGCGCCAGCTCAGTAAGTGAAATGATTTACGAGCTGTA    392
                     ||||.|||||| || ||.|||||.||.||.|||||||||||.||..|.||
BPUM_2570___y    344 GGGTGGATACAGAG-GCAAGCTCTGTGAGCGAAATGATTTATGAATTATA    392

BSNT_04273___    393 TTTAGAAGGAAAAGAGCACGGCTGGAAGCTGAATACGAAAGCGGCAGAGC    442
                     ||||||.||.|||||..|.||.|...||||||||||.||.|||||.||.|
BPUM_2570___y    393 TTTAGAGGGGAAAGAAGAAGGATATCAGCTGAATACAAAGGCGGCTGAAC    442

BSNT_04273___    443 TGATCTACGCCGGCATTGTTGGAGATACCGGACGCTTTTTATTTCCGAAT    492
                     |.||.||.|||||.|||||.|||||.||.||.|||||..|.||.||.||.
BPUM_2570___y    443 TCATTTATGCCGGGATTGTAGGAGACACAGGCCGCTTCCTTTTCCCAAAC    492

BSNT_04273___    493 ACCACGGAAAAAACATTAAAATATGCAGGCGAGCTCATTCAGTATCCATT    542
                     ||.|||.||||.||..|.||||||||.||.||.||.|||.|.||||||||
BPUM_2570___y    493 ACGACGAAAAAGACGCTCAAATATGCTGGAGAACTGATTGAATATCCATT    542

BSNT_04273___    543 CTCTTCCTCAGAGTTATTTAATCAATTGTATGAAACAAAACTGAATGTGG    592
                     .||.||.|||||..|.||.||||||||||||||.||..|.||||||||.|
BPUM_2570___y    543 TTCATCTTCAGACCTTTTCAATCAATTGTATGAGACGGATCTGAATGTCG    592

BSNT_04273___    593 TGAAGCTTAATGGCTTTATCTTTCAAAATGTGTCTTTGTCCGAAAACGGG    642
                     ||||..|.|||||||.|||.||||||.||.|.||||||||.||.||.|||
BPUM_2570___y    593 TGAAATTAAATGGCTATATTTTTCAACATATTTCTTTGTCAGAGAATGGG    642

BSNT_04273___    643 GCGGCTTCTGTTTTCATCAAAAAGGATACGCTTGAA-------AAATTCG    685
                     |..||||||||||||||.|||.||||||...|.|||       |||  ||
BPUM_2570___y    643 GTCGCTTCTGTTTTCATTAAACAGGATATATTGGAATCGTTCCAAA--CG    690

BSNT_04273___    686 GCACAACG--GCTTCTGAAGCGTCGCAGCTTGTCGGGACGCTCGGCAATA    733
                       |||.||  ||     ||||.||.||||||||.|||||.|||||.||||
BPUM_2570___y    691 --ACAGCGCAGC-----AAGCCTCACAGCTTGTTGGGACACTCGGAAATA    733

BSNT_04273___    734 TCTCAGGTATTCGCGCCTGGGTGTTTTTCGTAGAAGAAGACGATCAAATC    783
                     |..||||.|||...||.|||||.|||||.||.||||||.|.|||||.||.
BPUM_2570___y    734 TTGCAGGGATTAAGGCATGGGTCTTTTTTGTGGAAGAAAATGATCAGATT    783

BSNT_04273___    784 AGAGTCAGATTCCGTTCGAAGGGGCCT-GTCATTAACGGAC--TTGCCCG    830
                     .|.||.||||||||.||||| .|||.| ||||||||  .||  ||||...
BPUM_2570___y    784 CGTGTGAGATTCCGCTCGAA-AGGCGTCGTCATTAA--TACCATTGCGAA    830

BSNT_04273___    831 GAAATATAACGGCGGAGGGCATCCGTTAGCTTCAGGCGCCTCTATTTACA    880
                     .||||||.|.|||||.||.||.|||.|.||..|.||.||.||||||||..
BPUM_2570___y    831 AAAATATCATGGCGGCGGCCACCCGCTTGCAGCTGGAGCGTCTATTTATG    880

BSNT_04273___    881 GCTGGG--ATGAAGCTGATCGGATTTTAGC-TGATCTGGAAACATTATGT    927
                     ..||||  |||  ||.|||..|||||| || ||||.|.|||..|.|||||
BPUM_2570___y    881 ATTGGGCCATG--GCAGATGAGATTTT-GCGTGATTTAGAAGAAGTATGT    927

BSNT_04273___    928 AAA----GAACACGAGTAG    942
                     |||    .|.||.||    
BPUM_2570___y    928 AAATCATCATCATGA----    942


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