Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04426 and BPUM_2595
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_04426___ytsD.1.24716.seq
# -bsequence dna-align/BPUM_2595___ytsD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04426___ytsD-BPUM_2595___ytsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04426___ytsD-BPUM_2595___ytsD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04426___ytsD
# 2: BPUM_2595___ytsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2088
# Identity: 1319/2088 (63.2%)
# Similarity: 1319/2088 (63.2%)
# Gaps: 297/2088 (14.2%)
# Score: 3770.0
#
#
#=======================================
BSNT_04426___ 1 ATGAACATTAATCAGCTCATCCTGCGAAATTTGAAAAAGAATCTCCGGAA 50
|||||||||||||||||||||.|.||.||.|||||.||.|||.|....||
BPUM_2595___y 1 ATGAACATTAATCAGCTCATCTTCCGTAACTTGAAGAAAAATTTGAAAAA 50
BSNT_04426___ 51 TTACTATTTGTATGTGTTTGCGCTCATCTTTAGCGTGGCGCTTTATTTCG 100
|||||||||.|||||||||||.|||.|.|||||.||||||||.||.||..
BPUM_2595___y 51 TTACTATTTATATGTGTTTGCTCTCGTGTTTAGTGTGGCGCTCTACTTTT 100
BSNT_04426___ 101 CCTTTGTCACGCTGCAGTA-TGATCCAGCAATTAACGAAGTGAAGGCTTC 149
|.||||||||..||||||| |.| ||||||.||.|.||.||.||.|..||
BPUM_2595___y 101 CTTTTGTCACCTTGCAGTACTCA-CCAGCACTTGATGATGTAAAAGGGTC 149
BSNT_04426___ 150 AATCAAGGGAGCCGCGGCTATTAAAACCGCTTCGATTTTGCTTGTGGCTG 199
.||.|||||.|..||..|.||.|||.||||||||.|..|.||..|.||..
BPUM_2595___y 150 CATTAAGGGTGGTGCATCGATCAAAGCCGCTTCGGTCCTACTCATTGCCA 199
BSNT_04426___ 200 TTGTGGCGATCTTCATTTTATATGCCAATACGATTTTTATTAA---GAGA 246
||||.|.|||||||.|.||||||||.||.|..||||||||||| .|||
BPUM_2595___y 200 TTGTTGGGATCTTCTTGTTATATGCGAACAGCATTTTTATTAAACGAAGA 249
BSNT_04426___ 247 CGGAGTAAAGAAATCGGGCTGTTTCAATTGATTGGAATGACGAAGCATAA 296
.|||| ||||||.||.||..|.||..|.|||||.||||||||.||.||
BPUM_2595___y 250 GGGAG---AGAAATAGGTCTCCTGCAGCTCATTGGCATGACGAAACAAAA 296
BSNT_04426___ 297 AATTTTTAGC--ATCT--TAAGTGCAGAAAATGTCATGCTGTA---TTTC 339
|||| || |.|| |.|.|||||||||..|.||.||.|| .|||
BPUM_2595___y 297 AATT----GCCAAACTGCTCAATGCAGAAAACTTTATCCTATACGTGTTC 342
BSNT_04426___ 340 GGTTCATTAGC-GATCGGGGTAGC--GGCCGGGTTT-TCGATATCGAAGC 385
|||.|.|| |.| ||||.| .||.||.||| |||.| ||.||||
BPUM_2595___y 343 ---TCAATGGCTGTT---GGTATCATAGCTGGTTTTATCGGT-TCAAAGC 385
BSNT_04426___ 386 TTGTCTTGATGATTCTGTTCAAAATTGTCGATGTCAAAGCGGAT-GCGAA 434
|..|..|||||.|.||.||.|||.|...||..||.||.|| .|| ||.||
BPUM_2595___y 386 TCATGCTGATGGTGCTATTTAAAGTAACCGGCGTGAACGC-CATCGCCAA 434
BSNT_04426___ 435 ACTGCATTTTTCTGAGCA-GGC---TTTGGTCCAAACGGTCATTGTGTTC 480
..||||||||||.| ||| ||| |||| ||.||..|.||.||.||.
BPUM_2595___y 435 CTTGCATTTTTCAG-GCATGGCCCTTTTG---CAGACACTGATCGTCTTT 480
BSNT_04426___ 481 TGCGGCATTTACCTTTTGATCATGATCATGAATT--ATACGTTTATCAAA 528
|.|..|||.||....||.||||||.| |.|||.| || .||||||.||.
BPUM_2595___y 481 TTCATCATCTATGGATTAATCATGGT-AAGAAATCGAT-GGTTTATTAAT 528
BSNT_04426___ 529 AAACAGAGTATTTTATCTTTGTTTAAAGTAACGTCCTCCACTGAAGACAA 578
|.|||||..||||||||||||||||.|...|||||.|||||.||..|...
BPUM_2595___y 529 AGACAGACGATTTTATCTTTGTTTAGATCCACGTCATCCACAGAGCAGCG 578
BSNT_04426___ 579 AGTGAAGAAAATATCATTTTTCCAAATGCTGATCGGCGCTTTAGGCATCG 628
.|||||.|||||.||..|.||..|.||..|.||.||.|.|||.||.||.|
BPUM_2595___y 579 TGTGAAAAAAATCTCTGTGTTTGAGATCATCATTGGGGTTTTCGGTATTG 628
BSNT_04426___ 629 TGTTGATT--TTGACAGGATACTATGTGTCTTCTGAGCTGTTTGGCGGAA 676
|.|||||| || ||||.||.|||.|.||.|||.||||.|||..|||..
BPUM_2595___y 629 TCTTGATTAGTT--CAGGCTATTATATTTCCTCTAAGCTTTTTACCGGCT 676
BSNT_04426___ 677 AATTTAAGACCATTAATGAACTGTTTGTTGCGATGAGCTTCATTCTGGGG 726
.||.||.|.||||...||.|.|..||.|.|||||||..|..|||||.||.
BPUM_2595___y 677 CATATACGTCCATGCTTGCATTACTTTTAGCGATGATTTATATTCTTGGC 726
BSNT_04426___ 727 AGCGTCATTATCGGGACGTTTTTGTTTTATAAAGGATCAGTTACGTTTAT 776
...|||||||||||.||.|||.|.||.||||||||.||.|||.|.||.||
BPUM_2595___y 727 TCTGTCATTATCGGTACCTTTCTTTTCTATAAAGGCTCTGTTTCATTCAT 776
BSNT_04426___ 777 CTCGAATATCATTCGAAAAAGCAAGGGCGGCTACTTAAATATTTCTGAGG 826
..|.||||||.|.||.|||||.||....|||||..|....|||..|||.|
BPUM_2595___y 777 TGCCAATATCGTACGTAAAAGAAAAAATGGCTATCTCGCCATTCATGAAG 826
BSNT_04426___ 827 TCCTGTCACTGTCATCAATCATGTTCAGAATGAAATCGAATGCGCTGCTG 876
|||||||.||||||||.||.||||||.|..|.|||||.||.||.|||||.
BPUM_2595___y 827 TCCTGTCTCTGTCATCTATTATGTTCCGGTTAAAATCAAACGCACTGCTT 876
BSNT_04426___ 877 CTGACGATTATTACAACCGTTTCAGCACTTGCGATCGGGCTGTTATCTCT 926
.|.||||||||||||||.||.||.||||||||.||||||.|||||||| |
BPUM_2595___y 877 TTAACGATTATTACAACGGTATCTGCACTTGCCATCGGGTTGTTATCT-T 925
BSNT_04426___ 927 T--GCATATATCTCGTATTACTCGTCAGAAAAGACCGCTGAACAAAATGT 974
| || ||.||.||.||||||||..|||||||.||||||||||||
BPUM_2595___y 926 TAAGC-TACATTTCTTATTACTCAGCAGAAAAAACCGCTGAACAA----- 969
BSNT_04426___ 975 AGCGGCTGAT--------TTTTCATTCAT-GAAT--GAGAAAGATGCCAA 1013
|.||| .||||.|| || |.|| ||||||||.|.|||
BPUM_2595___y 970 -----CAGATCCCATCACATTTCGTT-ATGGGATCAGAGAAAGAAGTCAA 1013
BSNT_04426___ 1014 -----------GT----TATTTGA-AAACAGATTGAGGGAAAGCAACATC 1047
|| |.|.||| |||||.||||
BPUM_2595___y 1014 TACCTTCACTCGTGCACTTTCTGACAAACATATTG--------------- 1048
BSNT_04426___ 1048 TCGTTTGTAAAAAAGGCAACACCT----GTCCTGCAAGCAAATGTTGACA 1093
|||.||.||.|| ||||..| |||.|.|||||.||..|||||
BPUM_2595___y 1049 -CGTATGAAACAA----AACAATTCAAAGTCATTCAAGCGAAGTTTGAC- 1092
BSNT_04426___ 1094 TTGCA---AATATTATGGATGGAACTCCGAAAGAGATGCAGGGCGATCCC 1140
||| ||.||.|||||| || |||||| .
BPUM_2595___y 1093 --GCAAAGAAGATCATGGAT-----TC----AGAGAT------------A 1119
BSNT_04426___ 1141 AGCAATATG----------CAG-----------CTTGCTGTTGTTAGCGA 1169
|..|||||| ||| ||..||||..|.||.||
BPUM_2595___y 1120 AAAAATATGAATAATGACCCAGGTGTCTTAACTCTACCTGTGATCAGTGA 1169
BSNT_04426___ 1170 CAAA---------------GATGTAAAAGGAGTCGATGTGGCGGCTGGAG 1204
.||| .||||||||.|...|||.|| |..|| .
BPUM_2595___y 1170 GAAAAACGCACCAAATATTCATGTAAAAAGCAACGAAGT--CATCT---T 1214
BSNT_04426___ 1205 AAGCCGTTTTCTCAGGATACACCGACTTGCTGCAAAAAATAATG--GTTT 1252
|||| ||.||||..||.||..||.|.|||.|.||| |.||
BPUM_2595___y 1215 AAGC----------GGCTACAGTGATTTATTGAAGAAATTCATGCCGATT 1254
BSNT_04426___ 1253 TCAAGGACTCTGGTGTTATTAAAATAAAAAGCAAACATGAGACGCAGCCA 1302
..|| ||||.||||.|.|.|||.||...|.||| ||.|| ||.
BPUM_2595___y 1255 CAAA--ACTCAGGTGATGTGAAACTACTTATCAA----GAAAC----CCC 1294
BSNT_04426___ 1303 TTAAAATATAAAGG--------ATTAAGAGAAGAGTTTCTTGTATC---- 1340
|| .|..|||||| ||.|||| ||||.|.|||..|.||
BPUM_2595___y 1295 TT--GACTTAAAGGTCATTGATATGAAGA-AAGATTATCTCATCTCTTAC 1341
BSNT_04426___ 1341 --CTACACGTTTACAAGCGGGGGCATGCC---CGCTGTCATTGTGGATGA 1385
||.||||||| ||.||..|.|| .|||||| ||...|||
BPUM_2595___y 1342 AACTTCACGTTT------GGTGGTCTACCTGTTGCTGTC---GTCAGTGA 1382
BSNT_04426___ 1386 CAGCCTGTTTAAACAGCTGGACAAGGATAAGGACCC----CCGCATTCAG 1431
.||..|.|||.|||||||.|||.||.|.||.||.|| | |||||
BPUM_2595___y 1383 AAGTGTCTTTGAACAGCTTGACCAGCAGAAAGATCCTAAAC----TTCAG 1428
BSNT_04426___ 1432 CTGGCGC--AATCTACATTTATCGGC---GTCAATGTGAAACATGACGAT 1476
.|.|.|| ||||.| |||| .| ||||||.|.||| ||.|||
BPUM_2595___y 1429 GTTGAGCATAATCAA----TATC-ACACAGTCAATATAAAA---GATGAT 1470
BSNT_04426___ 1477 CAAA---TGGAAAAAGCAAATG--------AGCTTTTTCAA--CAGGTGA 1513
|||| |.|||.||||.|||| |.||.|||.|| .||||||
BPUM_2595___y 1471 CAAAACCTTGAACAAGCGAATGATGTGTTTACCTCTTTAAAACTAGGTGA 1520
BSNT_04426___ 1514 ACAAGAAAAACGAGCATTTATCAAGACTGGATACAAGCGCTGC-GCAAA- 1561
..|| |||||.|.||| |.|||.|.| |||.|.|| |||||
BPUM_2595___y 1521 CAAA--------AGCATGTCTCA--ATTGGCTTC-AGCTCAGCAGCAAAA 1559
BSNT_04426___ 1562 --AATCACTGTTTGGTATGGTGATGTTCATCGTCGGCTTCTTAGGGTTAA 1609
||.|| .|.||..||.|||||||..|||||||.||.|||||..|.|
BPUM_2595___y 1560 GCAAACA---ATAGGACTGATGATGTTTGTCGTCGGATTTTTAGGTCTCA 1606
BSNT_04426___ 1610 CGTTCCTGATTACATCAGGTTGTATCCTTTAT--TTTAAACAAATGGGTG 1657
..|||||..|.||||||||.||||| ||||| ||.||.||.|||..||
BPUM_2595___y 1607 GCTTCCTTGTCACATCAGGCTGTAT--TTTATACTTCAAGCAGATGAATG 1654
BSNT_04426___ 1658 AAAGTGAAGATGAAAAACCGAGC---TATACGATTTTAAGAAAACTCGGT 1704
||||||||||.|||.|| ||| ||.|||||.||..|.||.||.|||
BPUM_2595___y 1655 AAAGTGAAGAAGAACAA---AGCTCTTACACGATCTTGCGTAAGCTTGGT 1701
BSNT_04426___ 1705 TTTACGCAGGGCGACCTGATAAAGGGGATACGCATCAAACAAATGTACAA 1754
|||||..||...||.||..||||.||.||.||..|||||||..|.|..||
BPUM_2595___y 1702 TTTACTGAGAAGGATCTATTAAAAGGTATTCGGCTCAAACAGCTATTTAA 1751
BSNT_04426___ 1755 CTTCGGCATTCCGCTCGTTGTCGGCCT-CTTCCACAGTTACTTTGCCGTC 1803
|||.||.|||||.|||.|||||||..| ||| |||||.||||||||.||.
BPUM_2595___y 1752 CTTTGGGATTCCACTCATTGTCGGGTTGCTT-CACAGCTACTTTGCAGTA 1800
BSNT_04426___ 1804 CAATCCGGCTGGTTCTTATTCGGATCAGAGGTATGGGCGCCCATGATTAT 1853
||.||.||||||||.||||||||....||..|.|||.|.||.|||.|.||
BPUM_2595___y 1801 CAGTCAGGCTGGTTTTTATTCGGCGGTGAACTGTGGACACCAATGCTCAT 1850
BSNT_04426___ 1854 GGTGATGGTGTTATATACTGCGCTCTACTCCATTTTTGGTTTTCTGTCAG 1903
.||.|||..|.|.|||||.|.|.|.||.||.||.||.||.||.||.||.|
BPUM_2595___y 1851 CGTCATGTCGATTTATACAGTGTTATATTCTATCTTCGGCTTCCTTTCTG 1900
BSNT_04426___ 1904 TTCTTTATTATAAGAAGGTCATTAAATCGTCGTTGTGA 1941
|.|..||||||||.||||||||||||...||.||||.|
BPUM_2595___y 1901 TCCAATATTATAAAAAGGTCATTAAAGAATCCTTGTAA 1938
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