Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04309 and BPUM_2605

See Amino acid alignment / Visit BSNT_04309 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:51
# Commandline: needle
#    -asequence dna-align/BSNT_04309___braB.1.24716.seq
#    -bsequence dna-align/BPUM_2605___braB2.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04309___braB-BPUM_2605___braB2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04309___braB-BPUM_2605___braB2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04309___braB
# 2: BPUM_2605___braB2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1395
# Identity:     971/1395 (69.6%)
# Similarity:   971/1395 (69.6%)
# Gaps:         108/1395 ( 7.7%)
# Score: 3071.5
# 
#
#=======================================

BSNT_04309___      1 ATGAA-ACACTCACTGCCTGTC----AAAGATACCATTATTATTGGTTTC     45
                     ||||| .||   |||  .||||    ||||||||..||||.||.|||||.
BPUM_2605___b      1 ATGAAGGCA---ACT--TTGTCGACGAAAGATACGGTTATCATAGGTTTT     45

BSNT_04309___     46 ATGCTATTTGCGTTATTCTTTGGAGCAGGAAATATGATCTATCCGCCGGA     95
                     |||||.|||||..|||||||.||.||.||.||||||||.|||||.||.||
BPUM_2605___b     46 ATGCTGTTTGCTCTATTCTTCGGCGCCGGTAATATGATTTATCCACCAGA     95

BSNT_04309___     96 ACTTGGACAAGCAGCCGGACACAACGTCTGGAAGGCCATCGGCGGATTTT    145
                     .|||||.|||...||.||.||.||.||.|||||.||.||.||||||||||
BPUM_2605___b     96 GCTTGGGCAATATGCTGGGCAAAATGTGTGGAAAGCAATGGGCGGATTTT    145

BSNT_04309___    146 TACTGACAGGGGTAGGCCTGCCGCTTCTCGGCATTATCGCCATCGCATTA    195
                     ||.|.|||||.||.||..|.||.|||||.||.|||||.||.|||||..|.
BPUM_2605___b    146 TATTAACAGGTGTCGGTTTACCTCTTCTAGGGATTATTGCAATCGCTCTG    195

BSNT_04309___    196 ACCGGTAAGGACGCTAAAGGCCTTGCTGACAAAGCGCACCCTGTTTTCGG    245
                     ||.|||...||.||.|||||..|.|||||.|||||.|||||.|.|||.||
BPUM_2605___b    196 ACTGGTCGAGATGCGAAAGGATTAGCTGATAAAGCTCACCCAGCTTTTGG    245

BSNT_04309___    246 CACAATCTTTACTGTCGTGCTTTATTTATCAATCGGACCATTATTCGCCA    295
                     .|||...|||||.|||.|..|.||||||||.||.||.|||.|.|||||.|
BPUM_2605___b    246 AACAGCGTTTACCGTCATTTTATATTTATCTATTGGGCCACTTTTCGCTA    295

BSNT_04309___    296 TCCCGAGAACAGGAACTGTTTCATATGAAATTGGCGCTGTTCCGTTTTTG    345
                     |.||..|.||||||||.|||||||||||||||||.||..|.||.|||||.
BPUM_2605___b    296 TTCCTCGTACAGGAACGGTTTCATATGAAATTGGTGCATTACCCTTTTTA    345

BSNT_04309___    346 ACTGGCGTACCAGAAAGACT-----TTCTTTATTAATATTTACACTTATC    390
                     .|.||.|||||||...|.||     ||||||     ||||.||||||.||
BPUM_2605___b    346 GCAGGTGTACCAGCTTGGCTCTCACTTCTTT-----TATTCACACTTGTC    390

BSNT_04309___    391 TTTTTCGGCGTTACGTACTATTTAGCGTTAAACCCATCCAAGGTTGTCGA    440
                     |||||.||..|||||||.|||.|.||..||||.|||.|.|||.||||.||
BPUM_2605___b    391 TTTTTTGGTATTACGTATTATCTTGCTCTAAATCCAACGAAGATTGTAGA    440

BSNT_04309___    441 TCGAGTCGGAAAAATTCTGACTCCCATCAAATTCACGATTATTTTAATCA    490
                     .||.||.||||||.|..|.||.||.||.|||||.|||||||||||.||||
BPUM_2605___b    441 CCGTGTAGGAAAAGTGTTAACACCGATTAAATTTACGATTATTTTTATCA    490

BSNT_04309___    491 TTGTTCTCAAAGCCATCTTCACGCCGATGGGCG-GATTGGGCGC-CGTGA    538
                     ||.||.||||||||||.||.||||||||||||| .||| |||.| |.|||
BPUM_2605___b    491 TTATTGTCAAAGCCATTTTAACGCCGATGGGCGTTATT-GGCACACCTGA    539

BSNT_04309___    539 CAGAAGCATAT---AAAGGAACACCGGTTTTTAAAGGATTTTTAGAAGGC    585
                      .|.|.|.|||   ||.|||.||   .|||||||||||||||||||.|||
BPUM_2605___b    540 -TGTATCCTATAGCAACGGATCA---TTTTTTAAAGGATTTTTAGAGGGC    585

BSNT_04309___    586 TATAAAACAATGGACGCACTTGCTTCAATTGTATTTGGCGTTGTCGTTGT    635
                     ||||||||.|||||.||.||||||||.||.||.|||||.|||||.||..|
BPUM_2605___b    586 TATAAAACCATGGATGCTCTTGCTTCTATAGTGTTTGGGGTTGTTGTCAT    635

BSNT_04309___    636 AAATGC--TGTAAA--AAGCAAAGGCGTTACACAGTCTAAA-GCTCTTGC    680
                     .||.||  | ||||  |.||   ||.||.||| |||..||| ||.||..|
BPUM_2605___b    636 CAACGCCAT-TAAAGGACGC---GGTGTGACA-AGTAAAAAGGCACTGAC    680

BSNT_04309___    681 TGCAGCCTGCATTAAAGCAGGTGTGATTGCAGCTTTAGGCCTGACTTTCA    730
                     ..|.||.||.||.|||||.|||.||||||||||||..||..|.||.||..
BPUM_2605___b    681 ATCTGCTTGTATCAAAGCGGGTCTGATTGCAGCTTGCGGATTAACATTTG    730

BSNT_04309___    731 TTTATGTATCCCTTGCTTATTTAGGTGCAACAAGCACAAATGCCATCGGT    780
                     |||||.||||.||||||||||||||.||..||||.|||.|||||||.|||
BPUM_2605___b    731 TTTATCTATCTCTTGCTTATTTAGGCGCTTCAAGTACACATGCCATTGGT    780

BSNT_04309___    781 CCTGTTGGTGAAGG-AGCTAAAATTTTATCTGCGTCTTCCCATTATTTAT    829
                     ..||||||.||.|| || ||||||.||..||..||||||.||.|..||||
BPUM_2605___b    781 TTTGTTGGAGATGGTAG-TAAAATCTTGGCTCAGTCTTCTCAATTCTTAT    829

BSNT_04309___    830 TCGGGTCA--TTGGGCAACATCGTACTCGGAGCAGCGATTACAGTCGCAT    877
                     |.||  ||  ||.||.||.||.||..|.||.||.||||||||.||.||.|
BPUM_2605___b    830 TTGG--CAGCTTAGGAAATATTGTGTTGGGTGCTGCGATTACGGTGGCTT    877

BSNT_04309___    878 GTTTAACAACAAGCATCGGCCTTGTCACATCTTGCGGCCAATATTTTTCA    927
                     |||||||.|||||.|||||.||.||.|||||.|||||..|.|||||.|| 
BPUM_2605___b    878 GTTTAACGACAAGTATCGGTCTCGTTACATCATGCGGAGAGTATTTCTC-    926

BSNT_04309___    928 AAACTTATT-CCGGCATTATCATATAAAATTGTCGTTACGATTGTCACGT    976
                     .||.||||| ||...|.|.||.||||||||.||||||||..|.||.||.|
BPUM_2605___b    927 GAATTTATTACCTAAACTTTCTTATAAAATGGTCGTTACACTCGTGACAT    976

BSNT_04309___    977 TATTCAGCTTGATCATTGCGAATTTCGGACTCGCGCAAATTATCGCGTTT   1026
                     |||||||.||.||||||.|.|||||.|||||.||.||.|||||.||.||.
BPUM_2605___b    977 TATTCAGTTTTATCATTTCAAATTTTGGACTTGCTCATATTATTGCTTTC   1026

BSNT_04309___   1027 TCTGTTCCTATTTTATCAGCTATCTATCCGCTTGCCATTGTCATTATCGT   1076
                     |||||.||..|||||.|.||.||.||.||.||.||.||||||||.||.||
BPUM_2605___b   1027 TCTGTCCCAGTTTTAACTGCCATTTACCCACTAGCGATTGTCATCATTGT   1076

BSNT_04309___   1077 TCTTTCCTT--CATCGATAAGA-----TCTTTAAAGAAAGACGCGAAGTG   1119
                     |.|.||..|  ||  ||| |||     |..|.|||| |||||   ..||.
BPUM_2605___b   1077 TTTGTCGCTAGCA--GAT-AGATGGATTGGTCAAAG-AAGAC---CTGTT   1119

BSNT_04309___   1120 TACATCGCTTGC-TTGATCGGTACAGGACT-TTTCAGTATTTTAGACGGT   1167
                     |||.|| |||.| |||||....||||| || ..|||||.|.||.|||||.
BPUM_2605___b   1120 TACGTC-CTTACTTTGATTTTAACAGG-CTGCGTCAGTTTGTTTGACGGC   1167

BSNT_04309___   1168 ATCAAAGCAGC----CGGTTTTTCAC--TTGGATCTTT---AGATGTGTT   1208
                     .|...||||||    |      ||.|  |||||.|..|   .|||.|.||
BPUM_2605___b   1168 TTAGTAGCAGCGAAAC------TCCCGATTGGACCAGTGGAGGATCTCTT   1211

BSNT_04309___   1209 TCTAAATGCGAATCTTCCTCTTTACA--GCCTCGGCATCGGCTGGGTGCT   1256
                     ||.||   || ||.||.| |||||.|  .|||.||.||.||.|||||..|
BPUM_2605___b   1212 TCAAA---CG-ATATTAC-CTTTATATGACCTTGGTATTGGTTGGGTTGT   1256

BSNT_04309___   1257 TCCAGGAATCGTCGGAGCGGTTATCGG-------CTATGTGCTGACCTT-   1298
                     |||.|..||..||||||.|||.||.||       ||.|.| ||   ||| 
BPUM_2605___b   1257 TCCTGCTATTTTCGGAGTGGTCATTGGGTTCATTCTTTCT-CT---CTTC   1302

BSNT_04309___   1299 -ATTCATCGGACCATCCAAACAGCTTAATGAAATAAG----TTAA   1338
                      .|||.||.|  |.|||.||.|||...| ||||.|||    ||||
BPUM_2605___b   1303 ACTTCTTCTG--CTTCCCAAAAGCGGGA-GAAACAAGCATCTTAA   1344


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