Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04319 and BPUM_2610

See Amino acid alignment / Visit BSNT_04319 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:51
# Commandline: needle
#    -asequence dna-align/BSNT_04319___rpsD.1.24716.seq
#    -bsequence dna-align/BPUM_2610___rpsD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04319___rpsD-BPUM_2610___rpsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04319___rpsD-BPUM_2610___rpsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04319___rpsD
# 2: BPUM_2610___rpsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 604
# Identity:     503/604 (83.3%)
# Similarity:   503/604 (83.3%)
# Gaps:           2/604 ( 0.3%)
# Score: 2099.0
# 
#
#=======================================

BSNT_04319___      1 ATGGCTCGCTATACAGGTCCATCTTGGAAACTGTCCCGCCGTCTAGGAAT     50
                     |||||||||||||||||||||..||||||..|.|||||||||.||||.||
BPUM_2610___r      1 ATGGCTCGCTATACAGGTCCAAGTTGGAAGATTTCCCGCCGTTTAGGCAT     50

BSNT_04319___     51 CTCTCTTAGCGGTACAGGAAAAGAATTAGAAAAACGCCCTTACGCTCCAG    100
                     .||..|.|||||.|||||.||.|||.|.||||||||||||||||||||||
BPUM_2610___r     51 TTCATTAAGCGGAACAGGTAAGGAACTTGAAAAACGCCCTTACGCTCCAG    100

BSNT_04319___    101 GTCCACACGGCCCAGGACAACGTAAAAAATTATCAGAATACGGTTTGCAA    150
                     |.|||||.||.|||||||||||.||||||.||||.|||||||||||.|||
BPUM_2610___r    101 GCCCACATGGTCCAGGACAACGCAAAAAACTATCTGAATACGGTTTACAA    150

BSNT_04319___    151 TTGCAAGAAAAGCAAAAGCTTCGTCACATGTACGGTGTAAACGAACGTCA    200
                     ||.|||||.|||||||||||||||||||||||||||||.|||||||||||
BPUM_2610___r    151 TTACAAGAGAAGCAAAAGCTTCGTCACATGTACGGTGTCAACGAACGTCA    200

BSNT_04319___    201 ATTCCGCACTTTGTTTGACAAAGCTGGCAAACTAGCTGGTAAACACGGTG    250
                     ||||||.||..|.|||||||||||||..|||||..||||||||||.||||
BPUM_2610___r    201 ATTCCGTACACTATTTGACAAAGCTGCTAAACTTCCTGGTAAACAAGGTG    250

BSNT_04319___    251 AAAACTTCATGATTCTTTTAGATTCTCGTCTTGATAACGTTGTGTACAAG    300
                     |||||||||||||||||.|.||..||||.|||||.|||.|.||.|||...
BPUM_2610___r    251 AAAACTTCATGATTCTTCTTGAAACTCGCCTTGACAACCTAGTATACCGT    300

BSNT_04319___    301 CTAGGTTTAGCACGTACTCGCCGTCAAGCTCGCCAATTGGTTAACCACGG    350
                     ||.||..|.||.||||||||.||.||||||||.||..|.||||||||.||
BPUM_2610___r    301 CTTGGCCTTGCTCGTACTCGTCGCCAAGCTCGTCAGCTAGTTAACCATGG    350

BSNT_04319___    351 TCACATTCTTGTAGACGGAAGCCGCGTTGACATCCCGTC-TTACCTAGTG    399
                     .|||||.|||||.||.||||||||.||.||||||||.|| ||..|| |||
BPUM_2610___r    351 CCACATCCTTGTTGATGGAAGCCGTGTAGACATCCCATCATTCTCT-GTG    399

BSNT_04319___    400 AAACCTGGTCAAACAATCGGTGTTCGCGAAAAATCAAGAAACCTTTCTAT    449
                     |||||.||||||||.||.|.|.||||.||.|||||...|||||||.|..|
BPUM_2610___r    400 AAACCAGGTCAAACGATTGCTCTTCGTGAGAAATCTCAAAACCTTGCAGT    449

BSNT_04319___    450 CATCAAAGAATCTGTTGAAGTGAACAACTTCGTTCCTGAATACCTTACTT    499
                     ..|.||||||||.|||||||||||||.|||||||||||||||||||||||
BPUM_2610___r    450 TGTGAAAGAATCAGTTGAAGTGAACAGCTTCGTTCCTGAATACCTTACTT    499

BSNT_04319___    500 TCGACGCTGAAAAGCTTGAAGGTACTTTCACTCGTCTTCCTGAGCGTTCT    549
                     ||||.|||||||||||||||||.|||||||||||||||||.|||||||||
BPUM_2610___r    500 TCGATGCTGAAAAGCTTGAAGGAACTTTCACTCGTCTTCCAGAGCGTTCT    549

BSNT_04319___    550 GAACTTGCTCCGGAAATTAACGAAGCGCTTATCGTTGAGTTCTACTCTCG    599
                     |||.|.||.||.|||||.|.||||...||.||||||||||||||||||||
BPUM_2610___r    550 GAATTAGCGCCTGAAATCAGCGAACAACTAATCGTTGAGTTCTACTCTCG    599

BSNT_04319___    600 TTAA    603
                     ||||
BPUM_2610___r    600 TTAA    603


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