Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04332 and BPUM_2621

See Amino acid alignment / Visit BSNT_04332 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:52
# Commandline: needle
#    -asequence dna-align/BSNT_04332___aroA.1.24716.seq
#    -bsequence dna-align/BPUM_2621___aroA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04332___aroA-BPUM_2621___aroA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04332___aroA-BPUM_2621___aroA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04332___aroA
# 2: BPUM_2621___aroA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1091
# Identity:     856/1091 (78.5%)
# Similarity:   856/1091 (78.5%)
# Gaps:          19/1091 ( 1.7%)
# Score: 3335.0
# 
#
#=======================================

BSNT_04332___      1 ATGAAAAAAATGAGCAACACAGAGTTAGAGCTTTTAAGGCAGAAAGCAGA     50
                              ||||||||||..||..||||.|..||.||.|||.|||||||
BPUM_2621___a      1 ---------ATGAGCAACAATGAACTAGAACAATTGAGACAGCAAGCAGA     41

BSNT_04332___     51 CGAATTAAACCTACAAATTTTAAAACTAATCAACGAACGCGGAAATGTTG    100
                     .|||.||||.||.||||||||||||||.|||||.|||.|.|||||..|||
BPUM_2621___a     42 TGAACTAAATCTTCAAATTTTAAAACTGATCAATGAAAGAGGAAACATTG     91

BSNT_04332___    101 TAAAAGAGATCGGTAAAGCGAAGGAAGCACAGGGCGTCAACCGATTTGAC    150
                     |||||||.||.|||||||||||||||||.||.||.||||||||.|.|||.
BPUM_2621___a     92 TAAAAGAAATTGGTAAAGCGAAGGAAGCGCAAGGTGTCAACCGTTATGAT    141

BSNT_04332___    151 CCTGTCAGAGAACGCACAATGTTAAACAATATCATTGAAAACAATGACGG    200
                     |||||||||||.|||||||||.|||||.|.||..|||||.|.|||||.||
BPUM_2621___a    142 CCTGTCAGAGAGCGCACAATGCTAAACCAAATTCTTGAAGAAAATGATGG    191

BSNT_04332___    201 GCCGTTCGAAAATTCAACCATCCAGCACATTTTTAAAGAGATATTCAAAG    250
                     |||.||||||||.|||||.||.|||||.|||||.||||||||.|||||||
BPUM_2621___a    192 GCCATTCGAAAACTCAACGATTCAGCATATTTTCAAAGAGATTTTCAAAG    241

BSNT_04332___    251 CCGGTTTAGAGCTTCAGGAAGAAGATCACAGCAAAGCGCTGCTTGTCTCC    300
                     |.|||.||||||||||.|||||.||||||||||||||.||.|||||.||.
BPUM_2621___a    242 CAGGTCTAGAGCTTCAAGAAGATGATCACAGCAAAGCACTTCTTGTTTCT    291

BSNT_04332___    301 CGCAAGAAAAAACCTGAAGATACAATTGTTGATATCAAAGGCGAAAAAAT    350
                     ||.|||||||||||||||.||||||||||..|||||||.||.|||...||
BPUM_2621___a    292 CGTAAGAAAAAACCTGAAAATACAATTGTCAATATCAATGGAGAAGCGAT    341

BSNT_04332___    351 CGGAGACGGCCAGCAAAGATTCATTGTCGGCCCATGTGCGGTAGAGAGCT    400
                     ||||||.||..|.||..|.|||||.||.||.||||||||.||.||.||||
BPUM_2621___a    342 CGGAGATGGGAAACAGCGCTTCATCGTTGGACCATGTGCTGTTGAAAGCT    391

BSNT_04332___    401 ATGAGCAGGTAGCTGAAGTCGCTGCAGCTGCGAAAAAACAAGGGATTAAA    450
                     |.|||||.||.||.|||||.||.|||||.||||||.|.||| |||.||||
BPUM_2621___a    392 ACGAGCAAGTCGCAGAAGTGGCGGCAGCAGCGAAACAGCAA-GGACTAAA    440

BSNT_04332___    451 ATT--TTGCGCGGTGGAGCCTTTAAGCCTCGTACGAGCCCATACGATTTC    498
                     |||  || |||||.|||||.|||||.|||||.||.||.||||||||.|||
BPUM_2621___a    441 ATTACTT-CGCGGAGGAGCATTTAAACCTCGCACAAGTCCATACGACTTC    489

BSNT_04332___    499 CAAGGGCTTGGTGTTGAAGGCCTTCAAATTTTAAAACGTGTAGCGGATGA    548
                     |||||.||||||||.||.||.||..|||||.|.||.||||||||.|||||
BPUM_2621___a    490 CAAGGACTTGGTGTAGACGGTCTAAAAATTCTCAAGCGTGTAGCAGATGA    539

BSNT_04332___    549 ATTTGATCTGGCGGTTATCAGTGAAATCGTAACTCCGGCTCATATCGAAG    598
                     ||..|.|||.||.||.||.|||||||||||.|.|||.|||||.||..|||
BPUM_2621___a    540 ATACGGTCTTGCTGTCATTAGTGAAATCGTCAATCCTGCTCACATTCAAG    589

BSNT_04332___    599 AAGCGCTGGACTACATTGATGTCATTCAAATCGGAGCGCGCAATATGCAA    648
                     |||||.|.||..|.||.||||||||.||||||||.||.||.||.||||||
BPUM_2621___a    590 AAGCGATTGAGCATATCGATGTCATCCAAATCGGTGCACGAAACATGCAA    639

BSNT_04332___    649 AACTTCGAATTGCTGAAAGCGGCCGGCGCCGTGAAAAAGCCAGTGCTTCT    698
                     |||||||||.|..|.||||..||.||..|.|||||.||.||.||.|||.|
BPUM_2621___a    640 AACTTCGAACTTTTAAAAGAAGCTGGATCTGTGAACAAACCTGTTCTTTT    689

BSNT_04332___    699 GAAGCGCGGTCTTGCTGCAACGATCTCTGAATTCATCAATGCTGCTGAAT    748
                     .||.||.||||||||.||.|||||.||.||||||||||||||.|||||||
BPUM_2621___a    690 AAAACGTGGTCTTGCAGCGACGATTTCAGAATTCATCAATGCAGCTGAAT    739

BSNT_04332___    749 ACATCATGTCACAAGGAAATGACCAAATTATCCTTTGTGAGCGCGGAATC    798
                     |||||||..|.|||||||||||.|||||.||||||||.|||||.||.|||
BPUM_2621___a    740 ACATCATCGCCCAAGGAAATGATCAAATCATCCTTTGCGAGCGTGGTATC    789

BSNT_04332___    799 AGAACATATGAAACAGCAACGAGAAACACGCTGGATATTTCAGCTGTGCC    848
                     .|.|||||.|||||||||||.|||||.|||||.||||||||.||||||||
BPUM_2621___a    790 CGCACATACGAAACAGCAACAAGAAATACGCTAGATATTTCTGCTGTGCC    839

BSNT_04332___    849 GATTTTGAAACAAGAAACGCATTTGCCAGTCTTTGTTGATGTTACGCATT    898
                     .||||||||||||||.||.|||||.||||||||.||||||||.||.||.|
BPUM_2621___a    840 AATTTTGAAACAAGAGACACATTTACCAGTCTTCGTTGATGTGACACACT    889

BSNT_04332___    899 CAACAGGCCGCCGTGACCTCTTGCTTCCGACAGCTAAAGCCGCTTTAGCG    948
                     ||||.||.||..|.||.||..|.|||||.|||||.|||||.|||.|.|||
BPUM_2621___a    890 CAACTGGACGTAGAGATCTTCTCCTTCCAACAGCGAAAGCAGCTCTTGCG    939

BSNT_04332___    949 ATCGGTGCTGATGGCGTAATGGCTGAGGTTCACCCTGATCCGTCAGTCGC    998
                     ||.||.||.||.||.||.|||||.||.||.||.||.|||||.||.||.||
BPUM_2621___a    940 ATTGGAGCAGACGGTGTTATGGCAGAAGTGCATCCAGATCCATCTGTTGC    989

BSNT_04332___    999 ACTTTCTGACTCTGCTCAGCAAATGGCGATTCCTGAATTCGAAAAATGGC   1048
                     ..|.||||||||.||.||||||||||..||||||.||||||||||||||.
BPUM_2621___a    990 TTTATCTGACTCAGCACAGCAAATGGACATTCCTCAATTCGAAAAATGGT   1039

BSNT_04332___   1049 TGAATGAAC-TGAAG-CCAATGGTGAA-AGTCAACGCTTAA   1086
                     |..|||  | |.||| |||.|.||.|| |.|| ||||.|||
BPUM_2621___a   1040 TAGATG--CGTTAAGACCACTTGTTAACATTC-ACGCATAA   1077


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.