Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04343 and BPUM_2627
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_04343.1.24716.seq
# -bsequence dna-align/BPUM_2627___ytpT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04343-BPUM_2627___ytpT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04343-BPUM_2627___ytpT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04343
# 2: BPUM_2627___ytpT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3155
# Identity: 1847/3155 (58.5%)
# Similarity: 1847/3155 (58.5%)
# Gaps: 778/3155 (24.7%)
# Score: 5284.0
#
#
#=======================================
BSNT_04343 1 ATGAGTTGGCTTCATAAATTTTTTGATTTGTTTTTAGGCGAAAGCGAAGA 50
BPUM_2627___y 0 -------------------------------------------------- 0
BSNT_04343 51 GGATGCTGAACGGGAGAC----AAAACCCGCTCAAATTCCGCAGCAA--C 94
|.||||| |.|| |.||.|.|| |||.||| |
BPUM_2627___y 1 -----------GTGAGACCTGAAGAA---GGTCCAGTT--GCACCAAAGC 34
BSNT_04343 95 AAGAAGT------ACATCATCCTGAAGGACAAT-TAAAAAGATTGGAAGA 137
||..||| |||.||| || |.||| ||||||.||| |||||
BPUM_2627___y 35 AACCAGTCTTTGAACAGCAT----AA--AGAATATAAAAAAATT-GAAGA 77
BSNT_04343 138 TCCTAAAATATATTATGAATATCCAAAAGGCAAATTCCGTTTTCCAGTCG 187
|.|.|||.|.||||||||||||||.|.||||||.|||||.|||||..|.|
BPUM_2627___y 78 TACAAAAGTCTATTATGAATATCCGACAGGCAACTTCCGCTTTCCGCTTG 127
BSNT_04343 188 T---------------GCCTGACGGA-TACAAAAATCATGACCTGAGAAG 221
| ||.||||||| | |||.||.|| .|||||
BPUM_2627___y 128 TTCCAGATGAACCTCAGCGTGACGGAGT----AAAGCAGGA---AAGAAG 170
BSNT_04343 222 GCGCC----GCA----CA-CCATCGGACGAA-CCGAA-----ATCCGCGC 256
.|||| ||| || ||||.|| |.|| |.||| |||
BPUM_2627___y 171 ACGCCCGAAGCAAGGCCAGCCATTGG-CTAAGCAGAAGACCTATC----- 214
BSNT_04343 257 CTCGTC----CAAGTGCTGCA-CCTTACAGAGAGCGTCCCAGAAATGAAG 301
.||| |||..|.|||| |||.||| ||.|.|||
BPUM_2627___y 215 --AGTCAAAACAAACGGTGCAGCCTGACA--------CCAATAAA----- 249
BSNT_04343 302 AAGAGCAGCATACATATCAAGCAGCAGAGCCGGCGAAGAAACCGTTTAAA 351
||| .||| |||| |.||||||
BPUM_2627___y 250 AAG--------CCAT-TCAA--ACCAGAGC-------------------- 268
BSNT_04343 352 CCGACAAATATCCCTTCGCCTATCTATGGATTCAATCAAAAACCATCTGT 401
|.||.||.||.||.||.|||||.| |.||||
BPUM_2627___y 269 -------AGATTCCATCACCAATTTATGGCT----------ATCATC--- 298
BSNT_04343 402 TAAAAAGGATGTGC--------CGA--------AAAAG--------CCTT 427
|||||.||| ||| ||||| .|||
BPUM_2627___y 299 -----AGGATATGCGTCCAAAACGAACAGAAGCAAAAGAAGAATTATCTT 343
BSNT_04343 428 CTG---AAACATTGAACGAACCGGATAAATCG----GTAAAAGAGAAGGT 470
||| ||| ||||.|.|.|.||.|.|.|| || ||
BPUM_2627___y 344 CTGTTCAAA---TGAAAGCAGCAGAAACAGCGCAACGT----------GT 380
BSNT_04343 471 AACACTGCTGTCAGAAGAGATCGAACGTGAACGCGGCTATCCTGCTTCAG 520
.||.|||.|.|||||||||...||.||||||| |..|| .||||
BPUM_2627___y 381 CACCCTGTTATCAGAAGAGGCAGAGCGTGAAC---GAAAT-----GTCAG 422
BSNT_04343 521 ACA-CACCGGCGCATTCCA--AA-----AAAGAAAGTCCTTTCTTCCCGG 562
||| ||...|..||||||| || |||||||.|
BPUM_2627___y 423 ACAGCAAATGAACATTCCATCAATACGGAAAGAAAAT------------- 459
BSNT_04343 563 ATACCCAATTTGAA-AAACAGCCTTCTGGC----GTTTTAAACAGAAAGG 607
|.|.|.||| |||||| |||..|| || |..||||||
BPUM_2627___y 460 -----CGAATGGAAGAAACAG--TTCCAGCCCCAGT----AGAAGAAAG- 497
BSNT_04343 608 ATA-TGGAGCATGATGAGGCGCTGGCGAAACGGCCAGCCGAGCCGT---- 652
| |||| .|.|.|||| ||.|||
BPUM_2627___y 498 --AGTGGA--------------CGTCAAAAC---------AGACGTGACC 522
BSNT_04343 653 CAGGTAACAAAGTGCCATTT----GAG-----------TCAGG----CGT 683
|.|.|.|| ||| ||| |||.| |||
BPUM_2627___y 523 CCGCTTAC---------TTTGCAAGAGGAACTCGCTTATCACGATCACGT 563
BSNT_04343 684 TCAACAGCC---GGA------AAAAGAGGAGCCTTTCTTCCCAGCTGAA- 723
||||..|.| ||| |||.||.|||||| ||.||
BPUM_2627___y 564 TCAATCGACGATGGAGCGTTTAAATGACGAGCCT----------CTTAAT 603
BSNT_04343 724 CAAGCCGAAGAGCAAACACCGCCTG-------AGATGCTCACAG---ATA 763
|||.| ||||.|||.|..||||| .||..|||| || |||
BPUM_2627___y 604 CAAAC---AGAGGAAAAAGAGCCTGCCTTTTCTGAGCCTCA-AGACTATA 649
BSNT_04343 764 CGGCGGCTGAAGGGCTT------TCAGACAG-TGAAGTAGGCCGCGAA-- 804
..|..||||| ||| ||||..|| .||||||...|.||||
BPUM_2627___y 650 TTGAAGCTGA----CTTACATAATCAGCAAGCCGAAGTATATCACGAACC 695
BSNT_04343 805 -------------GAGCCTGCAACGGCTG------------AGGAAGA-- 827
|||||||.|..||.|| |.|||||
BPUM_2627___y 696 GCCGGTAGAAACTGAGCCTGTACAGGATGTTTCGGGTGAAAACGAAGAAA 745
BSNT_04343 828 -ACAAAGGGAGCAGCAGCCAGAGAAACTTG-----AAGAGCCTGTTTTCT 871
|||| ||..|||.|..|||..|..||| |||| ||
BPUM_2627___y 746 TACAA---GACGAGCCGGTAGAACAGTTTGTCGACAAGA---------CT 783
BSNT_04343 872 CCGCTGAACTTGA-----TGAAGAGC-----AAACAGCTCCTGAATCTCA 911
|.| |||.|.|| ||| | |||||| |.||| .|
BPUM_2627___y 784 CAG--GAAATAGAACCATTGA----CATTCGAAACAG---CAGAA---AA 821
BSNT_04343 912 GACAGAGGCAG-TATCTGAGGATGAAA---AAGCAAAAGAGCCGTCAGAC 957
.|||.|..|.| ||| ||||| |||.|.|...||||.||||
BPUM_2627___y 822 CACACATTCCGCTAT-------TGAAATGGAAGTAGACATGCCGGCAGA- 863
BSNT_04343 958 AGCCCAGTA----TACAATCACCATGAAAACGCGGCAGAA--GGT----- 996
|| .|||| |||.| .|.||.|.|.|.|||||| |||
BPUM_2627___y 864 AG--AAGTAGAGGTACTA----GACGACATCTCAGCAGAACCGGTCGAGG 907
BSNT_04343 997 --------GCTGAGTCCCCGTT---CGTTCAAGAAGAA---CAAATGG-- 1030
|||||.|||.|.|| |..|||||||||| |.|..||
BPUM_2627___y 908 AAATAGAAGCTGATTCCACTTTAGACCATCAAGAAGAAGTGCCAGCGGCA 957
BSNT_04343 1031 ACATTCGTCAGGAAGAGCCTTTATTTACTGA------TCATGAGTATTCA 1074
.|||| |||||| .||||| |...||||||
BPUM_2627___y 958 GCATT-----GGAAGA---------AACTGAACCAGTTGCCGAGTAT--- 990
BSNT_04343 1075 TCAGAGGCTCTGGCTCAAGCAGA--AACTGTGGCAAAAGAATCAGAAGAG 1122
|.|||| ||||.||| || |||..|.|||||.|.|||
BPUM_2627___y 991 ------GATCTG---CAAGAAGATCAA--GTGATAGAAGAAGCGGAA--- 1026
BSNT_04343 1123 CCCATAATAAATAATCA--TTATGAC-ATCCTGGGAGAGGCTCAGGAAAC 1169
|||.||.|..|||| |.|||.| || ||.|||.
BPUM_2627___y 1027 ---ATAGTAGAAGATCAAGTGATGCCAAT--------------AGAAAAA 1059
BSNT_04343 1170 GAAGATAGATGTTCAG----CCAGACAGCCATACAGAGCTTGAGAAAACT 1215
|||| ||| .|||||||| |||.||.| |||.|
BPUM_2627___y 1060 GAAG---------CAGACGAACAGACAGC--TACTGAAC--GAGTA---- 1092
BSNT_04343 1216 GAAC---ACATGGAGCAGGGTTCCAAATCGTCTACTGCACCTCTTGAAAA 1262
|||| .|||.|||||| ||| |||||
BPUM_2627___y 1093 GAACCAGTCATAGAGCAG-----CAA-------------------GAAAA 1118
BSNT_04343 1263 TCGGCAGGGAATTCGCGCAGACAAACCTCGCGAAGCTTCAGCAGAGCCGA 1312
||| ||| |.|||.||
BPUM_2627___y 1119 ---GCA------------AGA------------------ACCAGTGC--- 1132
BSNT_04343 1313 AAAAAAGGCCTGGTGCACAGGAGAAAAGGACCGAACAAAGCGCATCTTCT 1362
|..||| ||.|| |.|||||| |||||| |.|| ||||||.||
BPUM_2627___y 1133 -ATGAAG---TGATG----GAAGAAAA--ACCGAA-ACAG-GCATCTCCT 1170
BSNT_04343 1363 CA------------AAAAGGGC------CATCCGTTCCTTTTAATGTGAT 1394
|| ||..||.| ||.|.|||||||||||.||.||
BPUM_2627___y 1171 CAGCCACAACGTGCAAGCGGACAAACCTCAACGGTTCCTTTTAACGTCAT 1220
BSNT_04343 1395 GATGCTGAAAAGAGAT--ACGCAT--AA--ACAGCAAAAAGCAGAGGAGC 1438
||||.|.|||||.||| .|||.| || |||..|.||||||
BPUM_2627___y 1221 GATGTTAAAAAGTGATCAGCGCGTGCAAGGACAAAAGAAAGCA------- 1263
BSNT_04343 1439 GCCGCGGCA----GCTATGTATTTCCGAATGTTGCACTGCTTGATGTCCC 1484
||.|..||| |.|||||.|||||.|...|.||.||..|.||.||.||
BPUM_2627___y 1264 GCAGATGCAAAGGGATATGTGTTTCCAAGCCTCGCCCTTTTAGACGTACC 1313
BSNT_04343 1485 GCCAGCGCAGGTTCAAGATGA-TACTG--CGTGGATCGAAGA----ACAG 1527
.|||||.|| ..||||.|| .||.| |.|||.|..|||| .|||
BPUM_2627___y 1314 TCCAGCTCA---AAAAGAAGAGGACGGGACATGGGTGAAAGAGCGGGCAG 1360
BSNT_04343 1528 CGTCAGCTTCTTGATTTGACCTTGAAAAACTTCAATGTCCGCGCCAATGT 1577
||||.||..||...||..|||||||.|||||||||.|.||.|.|||
BPUM_2627___y 1361 ----AGCTGCTCAATGCCACGCTGAAAAATTTCAATGTCAGAGCAAGTGT 1406
BSNT_04343 1578 GGTCCATGTAACCCAGGGTCCGTCTGTCACGAGATTTGAAGTGCATCCTG 1627
.||.|||||.||.||.||.||.|||||.||.||.||||||||.|||||.|
BPUM_2627___y 1407 TGTTCATGTCACGCAAGGCCCTTCTGTGACAAGGTTTGAAGTACATCCAG 1456
BSNT_04343 1628 AACCGGGTGTAAAGGTGAATAAAATCACCAACTTGTCCGATGATATTAAA 1677
||||.|||||.||.|||||.||||||||.|||.||||.||||||||||||
BPUM_2627___y 1457 AACCAGGTGTCAAAGTGAACAAAATCACGAACCTGTCAGATGATATTAAA 1506
BSNT_04343 1678 CTCAGTCTCTCAGCGAGAGATATTCGGATTGAAGCGCCGATTCCGGGGAA 1727
||||||.|.||.||.|..|||||.||.||||||||.||||||||.||.||
BPUM_2627___y 1507 CTCAGTTTGTCCGCAAAGGATATACGAATTGAAGCACCGATTCCAGGAAA 1556
BSNT_04343 1728 AAACACGATCGGAATTGAAGTGCCGAACC-GCACGAGCAAGGTGGTTGAT 1776
.|||||||||||.|||||||||||||||| .||| ||.||..|||||...
BPUM_2627___y 1557 GAACACGATCGGGATTGAAGTGCCGAACCTTCAC-AGTAAAATGGTTTTC 1605
BSNT_04343 1777 TTGCGCCAAATGATTCGCAGCTCAGCTTTCAG-GACAAGCAAGTCACCGC 1825
||..|..|.|||||..|.|||...||.||||| |||||.|.| ||.||..
BPUM_2627___y 1606 TTAAGAGAGATGATCAGAAGCAGTGCGTTCAGAGACAATCCA-TCTCCTT 1654
BSNT_04343 1826 TCACAGCTGCGCTGGGATTAGATATTTCAGGAAATCCTGTTGTTATCGAC 1875
|.|||||.||.||.|||||||||||.||||||.|.||||||||..|.||.
BPUM_2627___y 1655 TAACAGCAGCACTCGGATTAGATATCTCAGGACAGCCTGTTGTCGTTGAT 1704
BSNT_04343 1876 TTGAAGAAAATGCCGCATGGCTTGATTGCCGGCGCTACAGGCTCCGGAAA 1925
.||.|.|||||||||||||||||.|||||.||.||.|||||.||.|||||
BPUM_2627___y 1705 CTGCAAAAAATGCCGCATGGCTTAATTGCTGGAGCAACAGGTTCAGGAAA 1754
BSNT_04343 1926 AAGCGTATGCATCAATACAATATTAGTCAGCCTGCTTTATAAAGC-TGAC 1974
|||.||.|||||||||||.||.|||||.|||.|..|.|.|||||| |.||
BPUM_2627___y 1755 AAGTGTTTGCATCAATACCATTTTAGTGAGCTTAATGTTTAAAGCATCAC 1804
BSNT_04343 1975 CCGAGTGAGGTAAAGGTGCTGCTGATTGATCCGAAAATGGTAGAGCTGGC 2024
|.|| |||.||.||..|||||.|.||.||.||.||||||||.||..|.||
BPUM_2627___y 1805 CAGA-TGAAGTGAAAATGCTGTTAATCGACCCTAAAATGGTTGAATTAGC 1853
BSNT_04343 2025 CCCTTACAATAAAATTCCTCACCTCGTCAGCCCAGTCATTACTGATGCTA 2074
.||.||.|||.|.|||||.||||||||.||.||.|||||.||||||||.|
BPUM_2627___y 1854 GCCGTATAATCATATTCCGCACCTCGTGAGTCCTGTCATCACTGATGCCA 1903
BSNT_04343 2075 AAGCGGCTACAGCTGCTTTGAAATGGGTCGTTGAGGAAATGGAGCGCCGC 2124
|..|.||.|||||||||.||||||||||.||.||.||||||||..|.|||
BPUM_2627___y 1904 AGACAGCGACAGCTGCTCTGAAATGGGTAGTAGATGAAATGGAAAGACGC 1953
BSNT_04343 2125 TATGAGCTTTTTGCCCATTCCGGTGTCCGCGACATTGACCGCTTTAATCA 2174
||.|||.|.|||||.||.||.|||||..|.||.|||.|.||.||.|||.|
BPUM_2627___y 1954 TACGAGTTGTTTGCGCACTCTGGTGTGAGAGAAATTAAACGATTCAATGA 2003
BSNT_04343 2175 ----ATTAACCGCTGAACACCAAATGGGTGAAAAGCTGCCATATTTAGTT 2220
.|||| .|||.|.||||||||||||||..||||.|||.|.|||
BPUM_2627___y 2004 GCTTGTTAA----AGAAAAACAAATGGGTGAAAAATTGCCTTATCTTGTT 2049
BSNT_04343 2221 GTCATTATTGATGAGCTTGCAGATTTGATGATGGTGGCTCCAAACGATGT 2270
||..|.||.||||||||.||.|||||.||||||||.||.|||||.||.||
BPUM_2627___y 2050 GTAGTGATCGATGAGCTCGCTGATTTAATGATGGTCGCACCAAATGAAGT 2099
BSNT_04343 2271 GGAAGAAAGCA-TTGCGCGGATCGCCCAAAAAGCCAGAGCGTGCGGTATC 2319
.|||||||||| |||| ||.|||||.||.|||||.|||||.|||||.||.
BPUM_2627___y 2100 CGAAGAAAGCATTTGC-CGAATCGCGCAGAAAGCAAGAGCATGCGGCATT 2148
BSNT_04343 2320 CATCTTCTCG-TTGCAACTCAGCGTCCGTCAGTCGATGTCATTACAGGTC 2368
|| |||.|.| ||||.||.||..|.||.||.||.||||||||.|||||||
BPUM_2627___y 2149 CA-CTTATTGATTGCGACACAAAGACCTTCTGTTGATGTCATCACAGGTC 2197
BSNT_04343 2369 TGATTAAGGCGAATATCCCAACGAGAATCGCCTTTTCTGTCTCAAGCCAG 2418
|.|||||.||.|||||.|||||.|||||.||.||.|||||||||||.|||
BPUM_2627___y 2198 TAATTAAAGCCAATATTCCAACAAGAATTGCTTTCTCTGTCTCAAGTCAG 2247
BSNT_04343 2419 GTTGATTCCCGAACAATTATTGACATAGCCGGTGCAGAAAAGCTTCTCGG 2468
||.|||||..||||.||.||.|||||.||.||||||||||||||||||||
BPUM_2627___y 2248 GTCGATTCTAGAACGATCATCGACATGGCAGGTGCAGAAAAGCTTCTCGG 2297
BSNT_04343 2469 AAAAGGGGATATGCTCTTTTTGGAAAACGGATCGGGAAAACCTGTC-CGT 2517
||||||.||.||||||||.||.|||||.||.||.||.||.|| |.| .|.
BPUM_2627___y 2298 AAAAGGAGACATGCTCTTCTTAGAAAATGGCTCCGGCAAGCC-GACGAGA 2346
BSNT_04343 2518 CTGCAAGGTAACTTTGTGTCAGACCGGGAAATCGACCGCGTCGTTTCTCA 2567
||||||||.||||||||.||||||||.||.|||||....||.||..|.||
BPUM_2627___y 2347 CTGCAAGGGAACTTTGTATCAGACCGTGAGATCGATGAAGTAGTGGCACA 2396
BSNT_04343 2568 CGTCAGA----AGCCAAATGCCGCCGACCTATT--TATTTGAACAAGAAG 2611
.||.||| |||..|| |||| .|.|| |.||.|||||.||.|
BPUM_2627___y 2397 TGTTAGAAAACAGCGGAA----GCCG--GTGTTCCTTTTCGAACAGGAGG 2440
BSNT_04343 2612 A------GCTCGTAAGACAAGGATCTGCCCTGAAAGAAGAGGACGAACTG 2655
| |||| |||||.|||||..|.|.|||.||.||.|||.||
BPUM_2627___y 2441 AATTAATGCTC------CAAGGCTCTGCGATTACAGATGAAGATGAATTG 2484
BSNT_04343 2656 TTTTACGAAGCGTGTGAGTTTGTTGTAGAGCAAAACAGTGCGAGCACTTC 2705
|||...||.|||||....||||...|.||||||||.||.||.||.||.||
BPUM_2627___y 2485 TTTATGGATGCGTGCCGTTTTGCCATTGAGCAAAATAGCGCTAGTACATC 2534
BSNT_04343 2706 AAGCCTGCAAAGAAGATTCAGAATCGGTTACAATCGTGCGGCAAGGCTGA 2755
.||..||||.||||||||.|||||.||.|||||||||||.||.||..|||
BPUM_2627___y 2535 GAGTTTGCAGAGAAGATTTAGAATTGGCTACAATCGTGCTGCGAGATTGA 2584
BSNT_04343 2756 TCGACATGATGGAAGCG-GAAGGCATGATCTCTGAGGCAAAAGGAAGCAA 2804
|||||||||||||| || ||.|||||||||||||..||||||||.||.||
BPUM_2627___y 2585 TCGACATGATGGAA-CGCGAGGGCATGATCTCTGGTGCAAAAGGCAGTAA 2633
BSNT_04343 2805 GCCTCGAGAGGTGCTGATCACAGCAAGTGATTTAATAAACGAA------- 2847
|||..|.||.||.||.||.|||...|||||.||| |||
BPUM_2627___y 2634 GCCAAGGGAAGTCCTCATGACACTGAGTGACTTA------GAACAGTTGA 2677
BSNT_04343 2848 --TAA 2850
|||
BPUM_2627___y 2678 TCTAA 2682
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