Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04368 and BPUM_2643
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_04368___ytkP.1.24716.seq
# -bsequence dna-align/BPUM_2643___ytkP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04368___ytkP-BPUM_2643___ytkP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04368___ytkP-BPUM_2643___ytkP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04368___ytkP
# 2: BPUM_2643___ytkP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 974
# Identity: 675/974 (69.3%)
# Similarity: 675/974 (69.3%)
# Gaps: 82/974 ( 8.4%)
# Score: 2249.0
#
#
#=======================================
BSNT_04368___ 1 ATGTTGAAAATCGTTGC---AAACACAGCTGATCTGATAGGAGATACACC 47
.|||| .||.|| |||.|.||||||.|||||.||.||||||||
BPUM_2643___y 1 ---ATGAA---GGTAGCACAAAATATAGCTGAGCTGATTGGCGATACACC 44
BSNT_04368___ 48 GCTAGTGAGATTGAATCGGCTTCAGCCGGAAAATGCGGCACAAGTCTATT 97
.||.||...|||..|.|||||||||||.||.|||||||||...||.||||
BPUM_2643___y 45 ACTTGTTCAATTACAGCGGCTTCAGCCAGACAATGCGGCAGCTGTGTATT 94
BSNT_04368___ 98 TGAAGCTTGAATTTTTCAATCCGAGCGGCAGTGTGAAAGACAGAGCCGCT 147
|.|||||.||||..||.|||||.||||||||||||||.|||.|.||.|||
BPUM_2643___y 95 TAAAGCTAGAATCGTTTAATCCTAGCGGCAGTGTGAAGGACCGCGCTGCT 144
BSNT_04368___ 148 TATCAA-ATGATCATAGAAGCTGAACAAAACG----GTTTACTCAAGCCG 192
|| ||| ||||||.|.||.||||||.||.|.| |.|.||..|||..|
BPUM_2643___y 145 TA-CAATATGATCGTCGAGGCTGAAAAACAAGGGAAGCTGACAAAAGGAG 193
BSNT_04368___ 193 GGATCAGTTATTATAGAGCCGACAAGCGGAAATACCGGAATCGGGCTCGC 242
.||.| ||.||.||.|||||.|||||.|||||.||.||.||..|.||
BPUM_2643___y 194 CGACC----ATCATTGAACCGACGAGCGGGAATACAGGGATTGGATTAGC 239
BSNT_04368___ 243 CATGAATGCGGCAGCACGCGGATATAAAGCAATCTTAGTTATGCCTGATA 292
||||||.||.|||||..|.||.|||.||||.|||.|.||.||||||||||
BPUM_2643___y 240 CATGAACGCAGCAGCTAGAGGGTATCAAGCTATCCTTGTGATGCCTGATA 289
BSNT_04368___ 293 CGATGACGAAGGAACGGATCAACCTGCTTAAA-GCTTACGGTGCAGAGGT 341
|||||||.||||||||.|||||..| .||||| ||||||||.||..||||
BPUM_2643___y 290 CGATGACAAAGGAACGAATCAATAT-TTTAAAGGCTTACGGGGCGCAGGT 338
BSNT_04368___ 342 TGTATTAACTCCCGGAGAGGAAAGAATGCCGGGCAGCATCAAAAAAGCGA 391
..|.||.||.||.||.||.||||.||||||.|||.|.||....|||||..
BPUM_2643___y 339 CATTTTGACCCCAGGGGAAGAAAAAATGCCAGGCTGTATTCGCAAAGCAG 388
BSNT_04368___ 392 AGGAGCTTGCCGAACAAATTCCGAACAGCTATATTCCAATGCAGTTCGAT 441
||||.||.||.|..||||||||..|.||||.|||.||.|||||.||.|||
BPUM_2643___y 389 AGGAACTGGCAGCTCAAATTCCTCATAGCTTTATCCCGATGCAATTTGAT 438
BSNT_04368___ 442 AACACTGCTAATCCTGATGCGCACCGGAAAACAACAGCGCCTGAAATCGC 491
||.|..||.|||||.|||||.||..|....|||||.||...||||||
BPUM_2643___y 439 AATAGGGCGAATCCAGATGCCCATAGAGGCACAACCGCTGTTGAAAT--- 485
BSNT_04368___ 492 CCGGGCAATAGAGG---------AAATCGGAAAACCGCTCGGCGCTTTTG 532
.||.||.| ||||.|||||.||.||.||.||.||||
BPUM_2643___y 486 ------TATGGATGCTGTCAAACAAATTGGAAAGCCTCTAGGAGCCTTTG 529
BSNT_04368___ 533 TCGCCTCCTCTGGAACGGGCGGAACCATTACCGGAACAGGTGAGGCGCTC 582
||||..|..|||||||.||||||||||||||.||.||.||||||| ..|.
BPUM_2643___y 530 TCGCAACAGCTGGAACTGGCGGAACCATTACAGGCACTGGTGAGG-AATT 578
BSNT_04368___ 583 AAAG--AGCTTTTTCCGGATATCACGGTTCATGTTGTTGAGCCAGCGGGT 630
|||| ||| .||.||..|..|.||..|.|.|||.|..||||||..|||.
BPUM_2643___y 579 AAAGAAAGC-ATTCCCTCAATTGACCATACGTGTGGCAGAGCCAAAGGGA 627
BSNT_04368___ 631 TCGCCTGTATTATCCGGCGGAAAACCTGGCGCGCATAAACTTGTAGGAAC 680
||.||.||.|||||.|||||.|.|||||||..||||||||||||.||.||
BPUM_2643___y 628 TCACCAGTTTTATCTGGCGGGACACCTGGCAAGCATAAACTTGTTGGCAC 677
BSNT_04368___ 681 GAGCCCAGGCTTTATACCGCCGATTTTAAATGAAGACGTTTATGATGAAA 730
.||||||||.|||||.||.|..||||||||.||..|.||.||||||||.|
BPUM_2643___y 678 AAGCCCAGGATTTATTCCCCAAATTTTAAACGAGCATGTCTATGATGAGA 727
BSNT_04368___ 731 TTAT-CAA--AATCTCTGATGAAGACGCGTATACGACGACAAGACGGCTT 777
||.| ||| ||.| ||||||||.|||||.||.|..|||.|||.||||
BPUM_2643___y 728 TTGTGCAAGTAAGC---GATGAAGATGCGTACACAATTACACGACAGCTT 774
BSNT_04368___ 778 G--CTGCTGAAGAAGGAATTCTTGTCGGTCCTTCATCAGGCGCTGCCTGC 825
| |.||| .|||||.|||.|.||.|||||.|||||.||.||.||||||
BPUM_2643___y 775 GCCCGGCT--TGAAGGGATTTTAGTTGGTCCATCATCTGGTGCAGCCTGC 822
BSNT_04368___ 826 TTCGCGGCAATCGAAACAGCGAAAC----GCCTCTCTCCTGACA----AA 867
|..||.||.||.||||||||.||.| ||| |.|| ||
BPUM_2643___y 823 TATGCTGCGATTGAAACAGCCAAGCAATTGCC--------GGCAGATCAA 864
BSNT_04368___ 868 GTTGTGGTCTGCATGACAGCTGATACAGGAGAACGGTACTTATCAACTGA 917
.|||||.||||.||||||||.||||||||.|||||.||||||||||.|||
BPUM_2643___y 865 ATTGTGATCTGTATGACAGCCGATACAGGCGAACGATACTTATCAAGTGA 914
BSNT_04368___ 918 TTTATGGTCATTTAT-----TTAA 936
| .||||| ||||
BPUM_2643___y 915 T--------GTTTATCAAGATTAA 930
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