Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01494 and BPUM_2644
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_01494___ygaJ.1.24716.seq
# -bsequence dna-align/BPUM_2644.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01494___ygaJ-BPUM_2644.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01494___ygaJ-BPUM_2644.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01494___ygaJ
# 2: BPUM_2644
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 876
# Identity: 343/876 (39.2%)
# Similarity: 343/876 (39.2%)
# Gaps: 429/876 (49.0%)
# Score: 521.5
#
#
#=======================================
BSNT_01494___ 1 ATGATGAAGCAGATTATTGCGATGGGGGGCGGGGGTTTTTCGATGGAGCC 50
BPUM_2644 0 -------------------------------------------------- 0
BSNT_01494___ 51 GGATAATTTGTCCCTCGATCAATA------TATCCTCAATCAATCAAAAC 94
|| ||..||.| |||.||| .|||.||||
BPUM_2644 1 ---------GT-----GAAAAAAATGTTCTTATGCTC-TTCATTCAA--- 32
BSNT_01494___ 95 GAGAGCAGC------CTCGTATTTGTTTTTTGCCGACGG------CG--- 129
||| |||| |||.|.|.||.|||| |||| ||
BPUM_2644 33 -AGA-CAGCTATTCTCTCTTGTCTGATTTT-----ACGGGTGAATCGTTA 75
BSNT_01494___ 130 AGCGGAGA-------------TTCCCAA-AACTA---------------- 149
|..|||.| ||||||| |.|||
BPUM_2644 76 AAAGGAAAACGCGTGACATTCTTCCCAACAGCTAGTGCTGTGGAAGAAGT 125
BSNT_01494___ 150 -------TAT------TCAGCGGTTTTATCATGCATTTCAAACACTGGAT 186
||| .||||| .|..|.||.|||||...|||.|
BPUM_2644 126 CACGCATTATGTGGAGGCAGCG----AAAGAAGCCTTTCATCAACTCG-- 169
BSNT_01494___ 187 TGTGTG----------CCGTCTCACTTATCTTTGTTTAAGCCGCC----- 221
||.|| |||| |||..||.| |.|||.|.|
BPUM_2644 170 -GTATGCAGCTAGAAACCGT-TCAGATAGC------TGAGCAGTCTACCG 211
BSNT_01494___ 222 -----ATCAACA-----GATTTAACTTCTTTTGTTATGGAAATGGACGTG 261
||| ||| |||..||| |||..||.|||
BPUM_2644 212 AAGAAATC-ACAAAGATGATCAAAC--------------AAAATGATGTG 246
BSNT_01494___ 262 ATTTATGTTGGCGGGGGAAATACGCGGAATTTACTTGTGTTAT------- 304
||.|||||....||.||.||.|| ||| ||||
BPUM_2644 247 ATGTATGTATCAGGAGGCAACAC----------CTT---TTATTTACTGC 283
BSNT_01494___ 305 -GGAAAGAGTGGGGGCTTGACCAGATTCTTAGGGAAGCATGGAAGA-ACG 352
|||| |||| |||.| |||
BPUM_2644 284 AGGAA-----------TTGA---------------------GAAAACACG 301
BSNT_01494___ 353 GTGTGGTTTTAGCTGGATTAAGTGCCGGTGCGATCTGCTGGTTTG-AAGA 401
|| ||.|||.|.|||| || ||||
BPUM_2644 302 GT----------CTCGATGACGTGC------------------TGAAAGA 323
BSNT_01494___ 402 AGGGGTGACGGATTCAGCCGGACCGCTG-ACAAGTTT----GAAAAGTTT 446
||...|.| ||..| |||..|||| ||| | |||
BPUM_2644 324 AGAAATCA---ATAAA---GGAAAGCTGTACA----TCGGCGAA------ 357
BSNT_01494___ 447 AGGTTTTTTGCAAGGGAGCTTTTGTCCCCATTATGACGGGGAAAAG---- 492
|.|..|||||| .||.||.|.||.|..|||
BPUM_2644 358 -------TCGGCAGGGAG----------TATCATCATGGCGCCAAGCATT 390
BSNT_01494___ 493 --------------GATCGGA-GACCGGCATA--CCACCAG--CTGATAT 523
||| ||| ||.|||||.| .|||||| ||...||
BPUM_2644 391 GAATATATCTCCTTGAT-GGATGAGCGGCAGAAGGCACCAGAACTTTCAT 439
BSNT_01494___ 524 -CTAACAAGTTCTTATGCAGTG---------GCTATGCAG---CGGATGA 560
|||.||||.| |.||.|| |||||.||| ||.|||
BPUM_2644 440 CCTATCAAGGT----TTCAATGAGGTAAGCCGCTATCCAGTACCGCATG- 484
BSNT_01494___ 561 TG---------------GG----GCTGCTCTCCATTTCATAAATGATCAG 591
|| || |||||.|..||..||.||| ||
BPUM_2644 485 TGCATAATACCTATTTAGGAGATGCTGCGCAGCAAATCCTAA------AG 528
BSNT_01494___ 592 CTGTTT---CAGACTGT-GAGTTCAAGGTCG------GAAGGAAAGGCAT 631
|.||.| .||||..| || ||.|.|..|| ||.|.|.||||.|
BPUM_2644 529 CAGTATGAAAAGACGCTCGA-TTTATGCCCGCTTACTGATGAACAGGCTT 577
BSNT_01494___ 632 -----ATC---GGGTGATGATGGCTGAACATGAAATAG-CTG--AAATTC 670
||| ||| || |..||||| |||.|.|| ||| ||||
BPUM_2644 578 TACTCATCACAGGG-GA-GCAGGCTG----TGATAAAGACTGCTAAAT-- 619
BSNT_01494___ 671 CGTTGCCGGTCAAATATTTAGGGTGA 696
|.|.|.||
BPUM_2644 620 ------CAGCCTAA------------ 627
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