Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04436 and BPUM_2676
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_04436___ytrB.1.24716.seq
# -bsequence dna-align/BPUM_2676___ytrB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04436___ytrB-BPUM_2676___ytrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04436___ytrB-BPUM_2676___ytrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04436___ytrB
# 2: BPUM_2676___ytrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 948
# Identity: 632/948 (66.7%)
# Similarity: 632/948 (66.7%)
# Gaps: 120/948 (12.7%)
# Score: 1992.5
#
#
#=======================================
BSNT_04436___ 1 ------------------ATGATT-------GAACTGCGGCAGCTGTCAA 25
.||||| |||.|| |.|| .
BPUM_2676___y 1 TTGAGGGAGGAAAAAAAGTTGATTGAGGTTAGAAATG-------TATC-G 42
BSNT_04436___ 26 AAGCGATT-----GACGGCAATCAAGTATTAAAAGATGTTTCATTAACAA 70
|||..||| |||| |.|||||.|.|...|.|||||.||.| ||
BPUM_2676___y 43 AAGACATTAAACGGACG----TGAAGTACTCAGTAACGTTTCCTTCA-AA 87
BSNT_04436___ 71 T----CGAAAAAGGAGAAATCTTTGGATTGCTTGGACGCAACGGATCGGG 116
| || ||||.||.||||||||.||||||||..|.||.||.||.||
BPUM_2676___y 88 TTAGGCG---AAGGTGAGATCTTTGGTTTGCTTGGTAGGAATGGCTCTGG 134
BSNT_04436___ 117 CAAAACGACGATGCTTCGCTTAATCCAGCAAATCATTTTTGCTGACAGCG 166
.|||||.||..|.||.|||||.||.||||||||..||.||.||||....|
BPUM_2676___y 135 TAAAACAACTCTTCTCCGCTTGATTCAGCAAATTCTTCTTCCTGATGAAG 184
BSNT_04436___ 167 GAACGATTTTATTT----GACG-GCGTAGAAATCAAAAAGCACCCGAAGG 211
||..|| ||||||| |||| ||.| .|.|||.|.||||||...|
BPUM_2676___y 185 GAGAGA-TTTATTTTAAAGACGTGCTT----GTGAAAGACCACCCGTTAG 229
BSNT_04436___ 212 TCAAACAAAATATCATCTACATGCCTGT--TCAAAATCCTT--TTTACGA 257
|.||.||||||||..|.||.|||||.|| || ||||||| ||| ||
BPUM_2676___y 230 TGAAGCAAAATATTGTGTATATGCCAGTCGTC--AATCCTTACTTT--GA 275
BSNT_04436___ 258 CAAGTATACA--TACAAGCAGCTTGT-----TGATATCCTGAGAAGAATA 300
|| .||||| |||..||||||||| ||.|| |||.|||
BPUM_2676___y 276 CA--GATACAATTACGGGCAGCTTGTCCAGCTGTTA-------AAGCATA 316
BSNT_04436___ 301 --TATCCGAAATTTGATGTCACGTACGCGAATGAACTGATGAACAGATAC 348
||.|||||.|||||.||.||.||.||.||||||||..||||..|.||.
BPUM_2676___y 317 TTTACCCGAAGTTTGACGTGACATATGCCAATGAACTTGTGAATCGCTAT 366
BSNT_04436___ 349 GAAATTCCAGAAACGAA--AAAATACCGTGAGCTGTCGACAGGCTTGAAA 396
||||||||.|||| || |||||||||.||.||.||||||||.||.|||
BPUM_2676___y 367 GAAATTCCCGAAA--AAGTAAAATACCGCGAACTATCGACAGGGTTAAAA 414
BSNT_04436___ 397 AAACAGCTGTCGCTCGTTCTGTCGTTTGCG-----GCGAGACCGGCGCTG 441
||.|||||.||..|..||.|....|||||| ||.|| ||| ||
BPUM_2676___y 415 AAGCAGCTCTCATTAATTTTAAGCTTTGCGATCAAGCCAG-CCG----TG 459
BSNT_04436___ 442 ATCCTCCTTGATGAGCCGACGGATGGTATTGATGCGGTAACTAGACATGA 491
||.||..|.|||||.|||||.||||||||||||||.||.||.|||.||||
BPUM_2676___y 460 ATTCTATTAGATGAACCGACAGATGGTATTGATGCCGTCACAAGAAATGA 509
BSNT_04436___ 492 TGTGCTGCAGCTGATGGTCGATGAAGTGGCAGAGCGTGATACGAGTATCC 541
|||.||.||.||.|||.||||.||.||.||.||.|||||.|||...||.|
BPUM_2676___y 510 TGTCCTTCAACTCATGATCGACGAGGTAGCGGAACGTGAAACGTCGATTC 559
BSNT_04436___ 542 TGATTACGTCTCACCGGCTTGAAGACATAGAGCGGATGTGCAACCGAATT 591
|.||.||.||.|||||..|.||.||.||.|||||.|||||.||||||||.
BPUM_2676___y 560 TCATCACATCGCACCGATTAGAGGATATTGAGCGTATGTGTAACCGAATC 609
BSNT_04436___ 592 GGCTTTCTTGAA-GATAACAGGCTGACCAACGTCATGGATCTTGATGAAT 640
||.|||.|.||| ||.|.|| .||.||.|..|||||||||||||||||||
BPUM_2676___y 610 GGGTTTTTAGAAGGAAATCA-ACTCACAAGTGTCATGGATCTTGATGAAT 658
BSNT_04436___ 641 TAAAAGAA-GAATACATCAAAATACAAATGGCCTTCGATACAGATGTCAA 689
| |||||| ||.||..|||||||.||.|||||.||.||...||||.|.||
BPUM_2676___y 659 T-AAAGAATGATTATGTCAAAATCCAGATGGCTTTTGAAGAAGATATGAA 707
BSNT_04436___ 690 TTTGGCCATCAGAGAGCAAAA----CATTCCGATGCTCGATCAGGCCGGC 735
.|||...||..|| |||| |.||.||||..|.|||||.||.|||
BPUM_2676___y 708 CTTGAGTATACGA----AAAAATGGCGTTGCGATATTAGATCAAGCGGGC 753
BSNT_04436___ 736 GTGTTTTACACAGTGCTGATTCCGAAAAGCGAT---GAGGAGAAAAAGAG 782
.|.|||||.||||.|||..|||..||||.|||| ||||..|||.||..
BPUM_2676___y 754 ATTTTTTATACAGCGCTCGTTCTTAAAACCGATGTAGAGGCTAAAGAGTA 803
BSNT_04436___ 783 CTTTTTGAGAG-AGCTGAAGCCAAAAGTATGGAATGAGCTTCCTGTCAAC 831
||| |.|| .|||..||||||||||.|||.||||.||.|||||.||.
BPUM_2676___y 804 CTT----AAAGTCGCTACAGCCAAAAGTTTGGCATGAACTGCCTGTGAAT 849
BSNT_04436___ 832 CTGGAAGAAGTGTTCATTGCGAAGTTTGGAGGGAAGCGGAGATGGTAG 879
.|.||||||||.||||||||.||||||||||||||.|||||||||||.
BPUM_2676___y 850 TTAGAAGAAGTATTCATTGCAAAGTTTGGAGGGAAACGGAGATGGTAA 897
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