Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04442 and BPUM_2682
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_04442___ytpB.1.24716.seq
# -bsequence dna-align/BPUM_2682___ytpB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04442___ytpB-BPUM_2682___ytpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04442___ytpB-BPUM_2682___ytpB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04442___ytpB
# 2: BPUM_2682___ytpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1156
# Identity: 785/1156 (67.9%)
# Similarity: 785/1156 (67.9%)
# Gaps: 125/1156 (10.8%)
# Score: 2560.0
#
#
#=======================================
BSNT_04442___ 1 GTGTTGACAGTACCGGAACATCCTTTTGGATTGATGGCAAAGGTATATCG 50
|||.|||||||.||.|.||||||||.|.|||||.|.|||||.|||..
BPUM_2682___y 1 ---TTGTCAGTACCAGAGCGTCCTTTTGCACTGATGACCAAGGTGTATAA 47
BSNT_04442___ 51 AGATATTTTTCCGCTCGTTCATCAAGAGCTGGACATATGG-AAGCAAAAA 99
|||||||||||||||.||.|||||.||||||.|.|..||| |||| ..|
BPUM_2682___y 48 AGATATTTTTCCGCTTGTACATCAGGAGCTGAAAAAGTGGCAAGC--TCA 95
BSNT_04442___ 100 T-CAGAATCGATTCATAACAGTGAATTGAA------AGCACAGGCAACCG 142
| |||||..||||.|.|| |||| ||| | |.||||||...|
BPUM_2682___y 96 TGCAGAAATGATTGAAAA---TGAA--GAACTGCGTA-CGCAGGCATTAG 139
BSNT_04442___ 143 CAAGTAT-TCGGGACAAAACGTTTCACTGTGAAGGCGGCGGCATACTGGC 191
|.||||| ||..| .|||||.||||||||.||||||||.|||||..|..|
BPUM_2682___y 140 CGAGTATATCAAG-TAAAACCTTTCACTGCGAAGGCGGAGGCATTTTATC 188
BSNT_04442___ 192 -CTTATTGTCAG--GCAGCCAAAAACAGAAA--TGTGTCGAGTTTATCAT 236
|||.|.| ||| |..||.|| ||||| |||.|.||.||.||..|
BPUM_2682___y 189 TCTTCTAG-CAGGTGATGCGAA----AGAAACGTGTATTGAATTCATTGT 233
BSNT_04442___ 237 CGCGTATCAAACGATTAGTGATTATTTGGACAATCTGTGTGACCGCAGCA 286
.|||||||||||.|||||||||||.||.||.||.||.|||||||||||.|
BPUM_2682___y 234 GGCGTATCAAACCATTAGTGATTACTTAGATAACCTATGTGACCGCAGTA 283
BSNT_04442___ 287 CCTCGCTGGACCCGCAGGATTTTCGGATGCTCCATGCCTCAATGCAGGAT 336
|.|||||.||.||..|.|||||||..|||| |||.||||
BPUM_2682___y 284 CGTCGCTTGATCCAAAAGATTTTCATATGC----TGCATCAA-------- 321
BSNT_04442___ 337 GCACTGACAGTTGGG------------GCGGAACTGCAAAAC-TATTATC 373
|||.|||.||.||.| ||.||.|| |||..| ||.||.|
BPUM_2682___y 322 GCAATGAGAGATGCGCTTGATATACATGCTGAGCT-CAAGCCTTACTACC 370
BSNT_04442___ 374 AATTCAGGGAAGAACAGGATGA-CAGCGGATATCTGCACGAACTGGT--- 419
|||||.|.||.||.||.||.|| || .||.|||.|.||||..||.||
BPUM_2682___y 371 AATTCCGTGATGATCAAGAGGATCA-TGGGTATTTACACGCGCTTGTCCG 419
BSNT_04442___ 420 -------CAAAACGTGCCAGCGTGTCCTTGGTTCCATTGAGCACTATGAC 462
|||.|||||| |||| |..|| ||.||||.|||...
BPUM_2682___y 420 CACATGCCAAGACGTGC-----TGTC----GCGCC-TTAAGCATTATCCG 459
BSNT_04442___ 463 ATGATTAAACCTTATCTGCTTGAA----CTGTGCGGCTATTATTGCGATT 508
||.|||.|.||.||| ||..| |||||||..||.||..|.||||
BPUM_2682___y 460 ATCATTCAGCCATAT----TTACACACGCTGTGCGATTACTACAGTGATT 505
BSNT_04442___ 509 TGCAGGTGCATAAGCACGTTATTGAGCATGAGCGTGTTCCGCGGCTTGAA 558
||||.||.|||||.|||||..||...||||||||.|||||||||||.|||
BPUM_2682___y 506 TGCAAGTACATAAACACGTCGTTCCTCATGAGCGGGTTCCGCGGCTAGAA 555
BSNT_04442___ 559 AAGTGGTTTACTCAATATGAATCAGAGCTGCCTGAGATGGAATGGTATGA 608
..||||||....|||||||||...||..|||||.||||||||||||||||
BPUM_2682___y 556 TCGTGGTTCCGCCAATATGAAAAGGATTTGCCTAAGATGGAATGGTATGA 605
BSNT_04442___ 609 ATTTTCAGCCTGTGCAGGCTCAACGTTAGGCATTTTCTGTCTGGTTGCGT 658
|||||||||.||||||||.|||||||||||.||.||||||||.||.||||
BPUM_2682___y 606 ATTTTCAGCTTGTGCAGGATCAACGTTAGGGATCTTCTGTCTTGTGGCGT 655
BSNT_04442___ 659 ATTCGTTCCAGCCTGATTTCACAGAAA-GCACCGCTAAAAAAATCCGCGA 707
||.||.|.|||||.||.||.||||||| ||| .||.||..||||....||
BPUM_2682___y 656 ATGCGCTTCAGCCAGACTTTACAGAAACGCA-GGCGAAGCAAATTTATGA 704
BSNT_04442___ 708 CAGTTATTTTCCTTACATACAGGGCCTTCATATCCTGCTTGATTATTTGA 757
.||||||||.|||||.||.||.||.||.||.||..|.|||||||||||.|
BPUM_2682___y 705 AAGTTATTTCCCTTATATTCAAGGTCTGCACATTTTACTTGATTATTTAA 754
BSNT_04442___ 758 TTGATCAAGAGGAGGACTTGCTGGAAGGAGACTTGAATTTCTGCTCATAT 807
||||.|||||.||.||...|||.|.||||||..|.||.||.|||||.||.
BPUM_2682___y 755 TTGACCAAGAAGAAGATCGGCTTGGAGGAGATCTAAACTTTTGCTCCTAC 804
BSNT_04442___ 808 TATCAGTCTCATGAAGAGATGATGAATCGGCTTGAACACTTTATCCATAA 857
|||...||||||.|.||||||||||||.|.|||.|.||.|||||..|.||
BPUM_2682___y 805 TATGCTTCTCATCATGAGATGATGAATAGACTTCAGCATTTTATTGAAAA 854
BSNT_04442___ 858 AGCCGACGAGCATTTACAAGGCATTCCGCATGAAAACTTCC----ATCGT 903
|||.||.||.||..||.|||||||||||||.||||||||.| ||.|.
BPUM_2682___y 855 AGCGGATGAACAGCTAAAAGGCATTCCGCACGAAAACTTTCACAAATTGA 904
BSNT_04442___ 904 TTAATCAATCGCGGCTTGCTTGG-TGTTTATTTGTCAGATGATAAAGTGG 952
|||| || |.||.|| .|||| .||.||||||||.|||||.||.|||.
BPUM_2682___y 905 TTAA-CA---GAGGATT-ATTGGCCGTCTATTTGTCCGATGAAAAGGTGA 949
BSNT_04442___ 953 CAGGCCAAAAGGAAATGGGCCGGCTCGCAAAGAAGCTGATCAAAGCCAGC 1002
|||.||||||.||.|||.....|||.|||||...|.||||||.|.|.||.
BPUM_2682___y 950 CAGCCCAAAAAGAGATGAATAAGCTGGCAAAACGGTTGATCAGATCAAGT 999
BSNT_04442___ 1003 GGAAAAACCTCCCTTTTCTTTTATATCAACGGCAGAGCCTACCGGAAATT 1052
||.|||||.||..|.||.||.||||||||.||.|||||.|||||||..|.
BPUM_2682___y 1000 GGGAAAACATCGTTCTTTTTCTATATCAATGGAAGAGCTTACCGGACTTA 1049
BSNT_04442___ 1053 TCAAAAAATGTCCTGGATGAAAAACTCA-AAGAAAAAAGCTCAAATCATT 1101
|||.||||||.|.|||||||||..|||| ||
BPUM_2682___y 1050 TCAGAAAATGCCGTGGATGAAATCCTCATAA------------------- 1080
BSNT_04442___ 1102 TGCTGA 1107
BPUM_2682___y 1080 ------ 1080
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