Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04444 and BPUM_2683

See Amino acid alignment / Visit BSNT_04444 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_04444___ytpA.1.24716.seq
#    -bsequence dna-align/BPUM_2683___ytpA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04444___ytpA-BPUM_2683___ytpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04444___ytpA-BPUM_2683___ytpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04444___ytpA
# 2: BPUM_2683___ytpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 794
# Identity:     576/794 (72.5%)
# Similarity:   576/794 (72.5%)
# Gaps:          28/794 ( 3.5%)
# Score: 2001.5
# 
#
#=======================================

BSNT_04444___      1 ATGTGGACCTGGAAAGCAGACAGACCTGTTG---CAGTGATTGTAATCAT     47
                     .|||||||.|||.|.||.||.|||||.||||   ||   |||||.||..|
BPUM_2683___y      1 TTGTGGACTTGGCATGCTGAAAGACCAGTTGGTACA---ATTGTGATAGT     47

BSNT_04444___     48 TCACGGGGCAAGTGAATATCACGGACGATATAAATGGCTGATTGAAATGT     97
                     .||.||.|||||||||||||||||.|||||||||||||||||.|||||||
BPUM_2683___y     48 ACATGGTGCAAGTGAATATCACGGCCGATATAAATGGCTGATCGAAATGT     97

BSNT_04444___     98 GGCGGTCTTCGGGTTATCACGTTGTCATGGGCGATTTGCCTGGACAGGGA    147
                     ||||...|.|.||.||||||||.||||||||.||..|||||||.||.||.
BPUM_2683___y     98 GGCGAAATGCCGGCTATCACGTCGTCATGGGTGACCTGCCTGGGCAAGGG    147

BSNT_04444___    148 ACAACGACAAGAGCGAGAGGGCATATTCGCTCGTTTCAAGAATACATTGA    197
                     |||.|||||.|.|||.|.||.||.|||||.||||||||||||||||||||
BPUM_2683___y    148 ACATCGACACGTGCGCGCGGCCACATTCGTTCGTTTCAAGAATACATTGA    197

BSNT_04444___    198 TGAAGTAGATGCTTGGATAGATAAAGCGCGAACCTTTGA-TCTGCCGGTT    246
                     |..||||||||..|||||.||..|.||| .||.|.||.| .||.||...|
BPUM_2683___y    198 TACAGTAGATGAATGGATCGAACATGCG-AAATCATTCAGGCTTCCTACT    246

BSNT_04444___    247 TTTCTTCTAGGTCACAGCATGGGCGGTCTGGTCGCGATTGAATGGGTTAA    296
                     |||.|.||.||.|||||.||||||||.||..|..|.|||||.|||||.||
BPUM_2683___y    247 TTTTTACTTGGACACAGTATGGGCGGACTCATTTCAATTGAGTGGGTCAA    296

BSNT_04444___    297 ACAGCAAAGAAATCCC---CG--GATTACGGGAATTATTTTATCATCACC    341
                     .|||.|.|     |||   ||  ||||...||..||||||||||||||||
BPUM_2683___y    297 GCAGTATA-----CCCATACGAAGATTGATGGCCTTATTTTATCATCACC    341

BSNT_04444___    342 GTGTCTCGGACTGCAAATTAAAGTCAATAAAGCGC---TTGATCTTGCAT    388
                     .|||.|.||.||||||.|||||...||.||   ||   |.|||.||||||
BPUM_2683___y    342 TTGTTTAGGTCTGCAATTTAAACCGAAGAA---GCTAATGGATTTTGCAT    388

BSNT_04444___    389 CAAAAGGTCTGAATGTCATCGCTCCGTCACTTAAGGTTGATTCGGGATTA    438
                     ||||||||.|.|||||..||||.|||||..||||.||.||.||.||..|.
BPUM_2683___y    389 CAAAAGGTTTAAATGTGCTCGCACCGTCCTTTAAAGTCGAGTCAGGGCTG    438

BSNT_04444___    439 TCAATTGATATGGCGACGCGCAATGAGGACGTCATCGAGGCTGACCAAAA    488
                     ||.|||||..|.||.||.||.|||.|||..||.||.||.||.|||...||
BPUM_2683___y    439 TCGATTGAACTAGCCACACGAAATCAGGCTGTGATTGAAGCAGACTCCAA    488

BSNT_04444___    489 TGATTCGTTATACGTCAGGAAAGTTTCTGTCAGATGGTACAGAGAGCTTT    538
                     |||.||..|.|||||.|..||.||.||.||..|.||||||.|||||||..
BPUM_2683___y    489 TGACTCCCTTTACGTAACAAAGGTGTCGGTTCGCTGGTACCGAGAGCTGA    538

BSNT_04444___    539 TAAAGACAATTGAATCGGCAATGGTGCCGACAGAGGCATTTTTGAA--AG    586
                     |.||.|..|||||..||||.|||..|||.||..|.|  |||||.||  |.
BPUM_2683___y    539 TCAAAAATATTGATGCGGCCATGCAGCCAACGAATG--TTTTTAAAACAA    586

BSNT_04444___    587 TTCCGCTTCTTGTGATGCAAGCCGGTGATGACAAGCTTGTTGACAAAACG    636
                     |||||||.|||.|.|||||.||.||||||||.|||.|.||.|||||.|||
BPUM_2683___y    587 TTCCGCTCCTTTTAATGCAGGCGGGTGATGATAAGATCGTCGACAAGACG    636

BSNT_04444___    637 ATGGTCATCAAGTGGTTTAATGGTGTTGCTTCTCATAATAAAGCATACAG    686
                     |.|||.||.||.|||||.|||||..|||..||....|||||..||||..|
BPUM_2683___y    637 AGGGTGATTAAATGGTTCAATGGCATTGAATCAACCAATAAGTCATATCG    686

BSNT_04444___    687 AGAGTGGGAAGGGCTTTACCATGAGATCTTCAATGAACCCGAGAGAGAAG    736
                     .||.|||||||..||.||.||.||.||.||.||||||||.||.|||||||
BPUM_2683___y    687 TGAATGGGAAGACCTGTATCACGAAATTTTTAATGAACCGGAAAGAGAAG    736

BSNT_04444___    737 ATGTTTTTAAAGCAGCAAGAGCGTTTACTGATCAATATATTTGA    780
                     ||||.|||||.|||||||||||.|||||.|||||||||||||||
BPUM_2683___y    737 ATGTGTTTAAGGCAGCAAGAGCCTTTACAGATCAATATATTTGA    780


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