Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04445 and BPUM_2684
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_04445___ytoA.1.24716.seq
# -bsequence dna-align/BPUM_2684___ytoA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04445___ytoA-BPUM_2684___ytoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04445___ytoA-BPUM_2684___ytoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04445___ytoA
# 2: BPUM_2684___ytoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 545
# Identity: 358/545 (65.7%)
# Similarity: 358/545 (65.7%)
# Gaps: 58/545 (10.6%)
# Score: 1135.5
#
#
#=======================================
BSNT_04445___ 1 ATGATCTACCCTTATAAGGA----ACACAAGCCAGATATCCACCCAACAG 46
.||||.||.||.|||.|..| ||| ||.||.||.||...|.|.|
BPUM_2684___y 1 GTGATTTATCCATATCATCAGTTTACA----CCTGAGATTCATGAATCGG 46
BSNT_04445___ 47 CCTTTATAGCTGATAATGCAACAATTACCGGTGATGTCGTGATCGGAGAA 96
.||||.|.||.|||||.||.||.|||||.||.||||||..|||.||||||
BPUM_2684___y 47 TCTTTGTCGCAGATAACGCCACCATTACTGGAGATGTCACGATTGGAGAA 96
BSNT_04445___ 97 CAGTCCAGCATTTGGTTTTCTGTT-------GTCATAAGGGGAGATGTTG 139
.|.||.|||.|.|| ||| |||||.||.||.|||||.|
BPUM_2684___y 97 TATTCAAGCGTGTG-------GTTCCAAACCGTCATCAGAGGCGATGTCG 139
BSNT_04445___ 140 CGCCGACCAGAATCGGAAACAGAGTCAATATCCAAGATTTAAGCTGCCTC 189
|.||....|||||.|||||.|..||||||||.|||||||||..|||.||.
BPUM_2684___y 140 CTCCTGTGAGAATTGGAAAAAACGTCAATATTCAAGATTTATCCTGTCTG 189
BSNT_04445___ 190 CATCAAAGCCC--GAACAAGACGCTGCTCATTGAAGATGACGCCACGATA 237
||||||||.|| || ||.||.||.||.||.|||||||..||.||.||.
BPUM_2684___y 190 CATCAAAGTCCTGGA--AAAACACTTCTTATAGAAGATGGTGCTACCATT 237
BSNT_04445___ 238 GGCCATCAGGTTACACTTCATAGCGCTGTTATCCGCAAGAACGCCTTAAT 287
||.||.||.||.|||.|.|||||..|..|.||.||.||.||.|||.|.||
BPUM_2684___y 238 GGACACCAAGTCACATTACATAGTTCAATCATTCGAAAAAATGCCCTCAT 287
BSNT_04445___ 288 CGGGATGGGCTCAATCATTTTAGACGGAGCCGAAATTGGCGAAGGCGCTT 337
.||.|||||.||.||||||.|.||.||.||.||||||||||||||.||.|
BPUM_2684___y 288 TGGTATGGGGTCCATCATTCTCGATGGTGCAGAAATTGGCGAAGGTGCCT 337
BSNT_04445___ 338 TTATTGGTGCCGGCAGTCTTGTCCCGCCCGGAAAAATCATTCC----GCC 383
||||.|||||.||.|||||.|||||.|..|||||..|.||.|| |
BPUM_2684___y 338 TTATCGGTGCAGGTAGTCTAGTCCCTCAAGGAAAGGTTATCCCAAAAG-- 385
BSNT_04445___ 384 TGACCATCTCGCCTTTGGCCGCCCTGCAAAAGTCATCCGCCCTTTGACGG 433
||.|| |||||.||.|||||.||.||.||.|||.||||.|..||.||.|
BPUM_2684___y 386 -GATCA-CTCGCTTTCGGCCGTCCAGCCAAGGTCGTCCGTCAATTAACAG 433
BSNT_04445___ 434 AAGAAGA---CCGAAAAGATATGCAAAGAATACGGTCAGAATATGTAGAA 480
|.||||| || ||||.|||.|.|||||.||...|||||||||||||
BPUM_2684___y 434 ATGAAGATATCC---AAGACATGGACAGAATCCGTAGAGAATATGTAGAA 480
BSNT_04445___ 481 AAGGGCCAATATTA---------TAAATTTCTTCAACAAACATAA 516
||.||.|||||.|| ||.||..|.|.||
BPUM_2684___y 481 AAAGGACAATACTATCGTTCCCTTATATCCCGTTAA--------- 516
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