Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04449 and BPUM_2687
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_04449___pckA.1.24716.seq
# -bsequence dna-align/BPUM_2687___pckA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04449___pckA-BPUM_2687___pckA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04449___pckA-BPUM_2687___pckA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04449___pckA
# 2: BPUM_2687___pckA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1615
# Identity: 1206/1615 (74.7%)
# Similarity: 1206/1615 (74.7%)
# Gaps: 59/1615 ( 3.7%)
# Score: 4420.0
#
#
#=======================================
BSNT_04449___ 1 ATGAACTCAGTTGATTTGACCGCTGATTTACAAGC------CTTATTA-A 43
|||||||||||.|||||.|..|..|||||.||..| ||.|||| |
BPUM_2687___p 1 ATGAACTCAGTGGATTTAAAAGAAGATTTGCAGTCATTGCTCTCATTAGA 50
BSNT_04449___ 44 CATGTCCAAATGTGCGTCATAATTTATCTGCAGCACAGCTAACAGAAAAA 93
||||..||..||.||||||||||...|..|.||....|||||.
BPUM_2687___p 51 -------AAATACGCACCAAAATTTATCTGTTCCGAAACTTGTTGAAAAG 93
BSNT_04449___ 94 GTCCTCTCCCGAAACGAAGGCATTTTAACATCCACAGGTGCTGTTCGCGC 143
.|..|..|.||..|.||||||.||||||||||.|||||.|||||.||.||
BPUM_2687___p 94 ATTTTGGCACGTGATGAAGGCGTTTTAACATCAACAGGAGCTGTCCGTGC 143
BSNT_04449___ 144 GACAACAGGCGCTTACACAGGACGCTCACCTAAAGATAAATTCATCGTGG 193
.|||||.||.||.|||||||||||.||.||||||||||||||.|||||..
BPUM_2687___p 144 TACAACGGGTGCCTACACAGGACGTTCGCCTAAAGATAAATTTATCGTAA 193
BSNT_04449___ 194 AGGAAGAAAGCACGAAAAATAAGATCGATTGGGGCCCGGTGAATCAGCCC 243
|.|||||||||.|..||.||||.||.||||||||.|..||.||.|||||.
BPUM_2687___p 194 AAGAAGAAAGCTCTGAACATAAAATTGATTGGGGTCAAGTCAACCAGCCG 243
BSNT_04449___ 244 ATTTCAGAAGAAGCGTTTGAGCGGCTGTATACGAAAGT--TGTCAGCTAT 291
|||||..|||||||.|||||.||..|.|||||.||.|| ||||| ||.
BPUM_2687___p 244 ATTTCTAAAGAAGCATTTGACCGTTTATATACAAAGGTTGTGTCA--TAC 291
BSNT_04449___ 292 TTAAAGGAGCGAGATGAACTGTTTGTTTTCGAAGGATTTGCCGGAGCAGA 341
|||||.||.||.||||||.|.||.||.||.||||||||||||||.|||||
BPUM_2687___p 292 TTAAAAGAACGTGATGAATTATTCGTCTTTGAAGGATTTGCCGGCGCAGA 341
BSNT_04449___ 342 CGAGAAATACAGGCTGCCGATCACTGTCGTAAATGAGTTCGCATGGCACA 391
.||.|.||||.|..||||.||.||.||.||.||.||.|||||||||||||
BPUM_2687___p 342 TGAAAGATACCGTATGCCAATTACAGTGGTGAACGAATTCGCATGGCACA 391
BSNT_04449___ 392 ATTTATTTGCGCGGCAGCTGTTTATCCGTCCGGAAGGA--AA-------- 431
||.|.|||||...|||.||.||.|||.|.||.||.||| ||
BPUM_2687___p 392 ATCTCTTTGCAAAGCAACTATTCATCAGACCTGACGGATCAACACCTTCT 441
BSNT_04449___ 432 TGATAAGAAAACAGTTGAGCAGCCGTTCACCATTCTT-TCTGCTCCGCAC 480
|.|.|.|||| |.||.||||||| |||| |||||.|||||.
BPUM_2687___p 442 TCAAACGAAA----------AACCTTTCACCA-TCTTATCTGCACCGCAT 480
BSNT_04449___ 481 TTCAAAGCGGATCCAAAAACAGACGGCACTCATTCCGAAACGTTTATTAT 530
||.|||||.|||||..|||||||.|||||..|.||.||||||||||||||
BPUM_2687___p 481 TTTAAAGCAGATCCTGAAACAGATGGCACAAACTCTGAAACGTTTATTAT 530
BSNT_04449___ 531 TGTCTCTTTCGAAAAGCGGACAATTTTAATCGGCGGAACTGAGTATGCCG 580
.||.|||||.|||||.||.||.|||.|.||.||.|||||.||.|||||.|
BPUM_2687___p 531 CGTTTCTTTTGAAAAACGCACCATTCTGATTGGTGGAACAGAATATGCAG 580
BSNT_04449___ 581 GTGAAATGAAGAAGTCCATTTTCTCCATTATGAATTTCCTGCTGCCTGAA 630
|.||.|||||.||||||||||||||..|.|||||.|.||||||.|||||.
BPUM_2687___p 581 GAGAGATGAAAAAGTCCATTTTCTCTGTCATGAACTACCTGCTTCCTGAG 630
BSNT_04449___ 631 AGAGATATTTTATCTATGCACTGCTCCGCCAATGTCGGTGAAAAAGGCGA 680
..||||||||||||.|||||||||||.||.||.||||||.||.|||||||
BPUM_2687___p 631 CAAGATATTTTATCGATGCACTGCTCAGCAAACGTCGGTCAAGAAGGCGA 680
BSNT_04449___ 681 TGTCGCCCTTTTCTTCGGACTGTCAGGAACAGGAAAGACCACCCTGTCGG 730
||||||.||.|||||.||.||.|||||.||.|||||.||.||.||.||.|
BPUM_2687___p 681 TGTCGCACTATTCTTTGGCCTTTCAGGTACTGGAAAAACGACGCTTTCAG 730
BSNT_04449___ 731 C-AGATGCTGACCGCAAGCTGATCGGTGACGATGAACATGGCTGGTCTGA 779
| || .||...||||||||||||||||||||||||||||||||||||||.
BPUM_2687___p 731 CTAG-CGCAAGCCGCAAGCTGATCGGTGACGATGAACATGGCTGGTCTGG 779
BSNT_04449___ 780 TACAGGCGTCTTTAATATTGAAGGCGGGTGCTACGCTAAGTGCATTCATT 829
..||||.|||||.||||||||.|||||.|||||.||.||.||..|..|.|
BPUM_2687___p 780 CTCAGGAGTCTTCAATATTGAGGGCGGATGCTATGCGAAATGTGTGAACT 829
BSNT_04449___ 830 TAAGCGAGGAAAAGGAGCCGCAAATCTTTAACGCGATCCGCTTCGGGTCT 879
|||||||.|||||.||.||||||||||..||.||.|||.|||||||.||.
BPUM_2687___p 830 TAAGCGAAGAAAAAGAACCGCAAATCTACAAAGCCATCAGCTTCGGATCA 879
BSNT_04449___ 880 GTTCTCGAAAATGTCGTTGTGGATGAAGATACACGCGAAGCCAATTATGA 929
|||||.|||||||||||..|.||||||||.|||||.|||||..|||||||
BPUM_2687___p 880 GTTCTTGAAAATGTCGTGCTTGATGAAGAAACACGTGAAGCGGATTATGA 929
BSNT_04449___ 930 TGATTCCTTCTATACTGAAAACACGCGGGCAGCTTACCCGATTCATATGA 979
.||..|.||||..|||||||||||.||.||.||||||||.|||.|.||||
BPUM_2687___p 930 CGACACATTCTTCACTGAAAACACACGTGCTGCTTACCCAATTGAAATGA 979
BSNT_04449___ 980 TTGACAACATCGTGACTCCAAGCATGGCCGGCCATCCGTCAGCAATTGTA 1029
||||.||||||||||..|||||.||.||.||.||.||.||.||.|||||.
BPUM_2687___p 980 TTGATAACATCGTGAAGCCAAGTATCGCAGGACACCCATCTGCCATTGTC 1029
BSNT_04449___ 1030 TTTTTGACGGCTGATGCCTTCGGAGTCCTGCCGCCGATCAGCAAACTAAC 1079
||.||.||.||||||||.||.||.||..|.||.||.||||||....||||
BPUM_2687___p 1030 TTCTTAACAGCTGATGCATTTGGCGTTTTACCTCCAATCAGCCGTTTAAC 1079
BSNT_04449___ 1080 GAAGGAGCAGGCCATGTACCATTTCTTGAGCGGTTACACGAGTAAGCTCG 1129
.||.||.|||||.||||||||||||||||||||||||||.|||||..|.|
BPUM_2687___p 1080 AAAAGAACAGGCGATGTACCATTTCTTGAGCGGTTACACAAGTAAATTAG 1129
BSNT_04449___ 1130 CCGGAACCGAACGTGGTGTCACGTCTCCTGAAACGACGTTCTCTACATGC 1179
|.|||||.||.||.|||||.||.||.||.|||||||||||||||||.|||
BPUM_2687___p 1130 CAGGAACTGAGCGCGGTGTTACATCACCAGAAACGACGTTCTCTACTTGC 1179
BSNT_04449___ 1180 TTCGGCTCACCGTTCCTGCCGCTTCCTGCTCACGTCTATGCTGAAATGCT 1229
|||||.||.||.|||.||||||||||.|||||||||||||||||||||||
BPUM_2687___p 1180 TTCGGTTCTCCATTCTTGCCGCTTCCAGCTCACGTCTATGCTGAAATGCT 1229
BSNT_04449___ 1230 CGGCAAAAAGATCGATGAACACGGGGCAGACGTTTTCTTAGTCAATACCG 1279
.|||||.||.||.|||||.|||||.|||.|.||.|||.|.||.||.||.|
BPUM_2687___p 1230 TGGCAAGAAAATTGATGAGCACGGCGCAAAAGTATTCCTTGTGAACACAG 1279
BSNT_04449___ 1280 GCTGGACCGGGGGCGGCTACGGCACAGGCGAACGAATGAAGCTTTCTTAC 1329
|||||||.||.||.|||||.||.||||||.||||.|||||.||..|..|.
BPUM_2687___p 1280 GCTGGACTGGCGGAGGCTATGGTACAGGCAAACGTATGAACCTAGCGCAT 1329
BSNT_04449___ 1330 ACTAGAGCAATGGTCAAAGCAGCGATTGAAGGTAAATTAGAGGATGCTGA 1379
||.|||||||||||..||||||||||.||||||.|..|.||..|.||.||
BPUM_2687___p 1330 ACAAGAGCAATGGTGCAAGCAGCGATCGAAGGTGACCTCGACAACGCCGA 1379
BSNT_04449___ 1380 AATGATAACTGACGATATTTTCGGCCTGCACATTCCGGCCCATGTTCCTG 1429
||||||.|||||.||.||.||.||..|.|||||.|||...|||.||||||
BPUM_2687___p 1380 AATGATCACTGATGACATCTTTGGATTACACATCCCGCTTCATATTCCTG 1429
BSNT_04449___ 1430 GCGTTCCTGATCATATCCTTCAGCCT--GAAAACACGTG--GACCAACAA 1475
||||.||.|||.|..|.|||||.||| .||||||.|.| ||||||
BPUM_2687___p 1430 GCGTACCAGATGAAGTGCTTCAACCTTCTAAAACATGGGATGACCAA--- 1476
BSNT_04449___ 1476 GGAAGAATACAAAGAAAAGGCAGTCTACCTTGCAAATGAATTCAAAGAGA 1525
||.|..||..|||||||.|||..||.||||||.||||||||.|||.|||
BPUM_2687___p 1477 -GAGGCTTATCAAGAAAAAGCACACTTCCTTGCCAATGAATTTAAAAAGA 1525
BSNT_04449___ 1526 ACTTTAAAAAGTTC--GCACATACCGA-TGCCATCGCCCAGGC---AGGC 1569
||||..||||.||| .|||..|.|.| ||.|||.| |.|| ||||
BPUM_2687___p 1526 ACTTCCAAAAATTCAGCCACGCAGCAAGTGACATTG---AAGCTAAAGGC 1572
BSNT_04449___ 1570 GGCCCTCTCGTATAA 1584
||.||.|||||||||
BPUM_2687___p 1573 GGACCACTCGTATAA 1587
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