Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04453 and BPUM_2694

See Amino acid alignment / Visit BSNT_04453 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_04453.1.24716.seq
#    -bsequence dna-align/BPUM_2694.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04453-BPUM_2694.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04453-BPUM_2694.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04453
# 2: BPUM_2694
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1055
# Identity:     686/1055 (65.0%)
# Similarity:   686/1055 (65.0%)
# Gaps:         103/1055 ( 9.8%)
# Score: 1991.5
# 
#
#=======================================

BSNT_04453         1 GTGAACAGATGGT----------TAAGGCTGGGCTTCGCCTGT-GTCG--     37
                     .|||    ||.||          |.||.||||..|||..| || ||||  
BPUM_2694          1 TTGA----ATCGTTCCATCAAAGTCAGACTGGCATTCATC-GTCGTCGTC     45

BSNT_04453        38 --GCAGTATCTTTCT--GATGT-TCGCCCTGGCGGCTTGCAAGCAGGAAG     82
                       ||    |||||.|  .||.| |||||         ||.||..|.|||.
BPUM_2694         46 CTGC----TCTTTATTCCATTTGTCGCC---------TGTAAAAAAGAAC     82

BSNT_04453        83 AAACGCTCACCAAAGTCAAAGTAGCTGAAGTGACCCATTCAATTTTTTAC    132
                     |...||..|||   ||..|||||||.||.|||||||||||..|.|||||.
BPUM_2694         83 AGGAGCAGACC---GTACAAGTAGCCGAGGTGACCCATTCGGTCTTTTAT    129

BSNT_04453       133 GCACCTTTATATGTTGCTGAGTCTAAAGGTTTTTTTAAGGAAGAAGGGCT    182
                     ||.||..|.|||||.||....|||.|.|||||.||.||.||||||||.||
BPUM_2694        130 GCTCCGCTTTATGTCGCACTATCTGAGGGTTTCTTCAAAGAAGAAGGCCT    179

BSNT_04453       183 TGATGTCGATGTGAATACGACCTGGGGCGGAGATAAAACGATGACATCGC    232
                     .||.||.||..||||.||.||.||||||||.|||||||||||||||  ||
BPUM_2694        180 GGAGGTTGAACTGAAAACCACTTGGGGCGGCGATAAAACGATGACA--GC    227

BSNT_04453       233 T-TCTT-TCCAACGGCTCCGACATCGCGCTTGTCGGGTCAGAAACATCTA    280
                     | |||| ||...|||..|.||.|||||.||...|||.||.|||.|.||||
BPUM_2694        228 TCTCTTATCAGGCGGTGCTGATATCGCCCTGACCGGCTCTGAATCCTCTA    277

BSNT_04453       281 TTTATGTCGAAGCGCAAGGGGCTAAAGATCCCGTCATTAATTTCGCCCAG    330
                     |.|||||.||.||.||||...|.||.|||.|.|||||.||.||.||.|||
BPUM_2694        278 TCTATGTAGAGGCTCAAGACACAAAGGATTCTGTCATGAACTTTGCACAG    327

BSNT_04453       331 CTGACTCAGACAGACGGAACGTTTCTTGTCGCGAGAGAAGATGTTGAACA    380
                     |||||.||.||||||||.||.||||||||..|.||.||..|.||..|.||
BPUM_2694        328 CTGACCCAAACAGACGGCACATTTCTTGTTTCAAGGGAGAAAGTAAACCA    377

BSNT_04453       381 CTTCGACTGGGATCAGCTGAAAGGAAAA-ACGTTTC-TCGGTCAGCGAAA    428
                     .|||...||||||||..|.||||||||| ||  ||| |.||.|||||.||
BPUM_2694        378 ATTCTCTTGGGATCAATTAAAAGGAAAAGAC--TTCTTAGGACAGCGGAA    425

BSNT_04453       429 AGGCGGCATGCCGCAAATGGTCGGCGAGTATGTACTGAACAAACATAAG-    477
                     ||||||||||||||||||||||||.||.|||||..|||  |||.|.||| 
BPUM_2694        426 AGGCGGCATGCCGCAAATGGTCGGTGAATATGTCTTGA--AAAAAGAAGG    473

BSNT_04453       478 -ATTGACCCGCATAAGGATATAGACCTC-----ATCCAGAACATAGACTT    521
                      |||||.....|.||||||     |.||     ||.||.||.||.||.||
BPUM_2694        474 CATTGATGTCAAAAAGGAT-----CTTCGTATGATTCAAAATATTGATTT    518

BSNT_04453       522 CGCCAATATTGCCAATGCGTTTGCTTCTGGAACCGGTGAGTATGTACAGC    571
                     .|||||.|||.|...||||||..|.||||||||.||.||.|.|||.|||.
BPUM_2694        519 TGCCAACATTTCAGGTGCGTTCTCCTCTGGAACTGGCGATTTTGTGCAGT    568

BSNT_04453       572 TCTTTGAACCGCAGGCTTCTCTCTTTGAGAAAAAAGGCATCGGCCATATC    621
                     |.||.||||||...|||||..|..|.||.|||.||||.|..||..|.||.
BPUM_2694        569 TATTCGAACCGACCGCTTCCTTACTCGAAAAAGAAGGTAAAGGGTACATT    618

BSNT_04453       622 GTGGCTTCATTCGGAGAAGAATCAGGAGAGGTTCCTTATACGACTTTTAT    671
                     ...||.||.||.|||||||..||.||..||||.||.|||||.||.||.||
BPUM_2694        619 ACCGCCTCCTTTGGAGAAGCTTCTGGCAAGGTGCCATATACCACCTTCAT    668

BSNT_04453       672 GGCGAAACAA-AGCTATTTGAAGAAAAATGAAGACACAGCCGTCAAG--T    718
                     ||| |||.|| ||.||.||..||.||||..||||.||.||  |.|||  |
BPUM_2694        669 GGC-AAAGAAGAGTTACTTAGAGGAAAACAAAGAGACCGC--TGAAGCCT    715

BSNT_04453       719 TTACAAAAGCCATTTATAAGGCGCAGCAGTGGGTTGAA---AATCATTCT    765
                     |.||....||||||||.||.||||||.|.|||||.|||   ||.||..||
BPUM_2694        716 TCACCCGCGCCATTTACAAAGCGCAGAAATGGGTAGAAGCCAAACAGCCT    765

BSNT_04453       766 GCGAAGGACATCACAGATGCCATTAAAGATGAATTTGATGATACCGACCC    815
                     |   ||||.|||.||.|.||||||.||..|.|.|||..||||||.||.|.
BPUM_2694        766 G---AGGAGATCGCAAAGGCCATTCAATCTCATTTTCCTGATACAGATCT    812

BSNT_04453       816 AGACGTC--ATCGAAACATCCATTGAACGCTATAAAAAACAGCATTCATA    863
                     .||.|||  |||  |||..|.||..|||||||.|||.|.||..||||.|.
BPUM_2694        813 TGATGTCTTATC--AACTGCGATCAAACGCTACAAACAGCAAGATTCCTT    860

BSNT_04453       864 TTCACCAGACCCTCTGCTTAACGAAAAAGAATGGGAGCTTCTCCAAA---    910
                     |.||.||||.||.||..|.||.|||.|.||||||.|       ||||   
BPUM_2694        861 TGCAACAGATCCCCTTTTGAATGAAGAGGAATGGAA-------CAAATTG    903

BSNT_04453       911 ----CCATTATGGATAAATCGGGAGAACTGCCGAAGCACATT----CCAT    952
                         ..||.|||.|.|||...||.|||.|||||.|    |||    ||.|
BPUM_2694        904 CAGGAAATCATGAAGAAAAGCGGTGAATTGCCGGA----ATTTATCCCGT    949

BSNT_04453       953 ACAATCAGCTTGTAAATAAAGAAATTGCTGAAAAAGTCAC--CTCGGAGA   1000
                     ||||.||.|||||..||......|||||..|.||.|||||  .||  |.|
BPUM_2694        950 ACAAACAACTTGTCGATTCCTCCATTGCAAAGAAGGTCACAGATC--ACA    997

BSNT_04453      1001 AATAG   1005
                     |||||
BPUM_2694        998 AATAG   1002


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