Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04459 and BPUM_2697
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:01
# Commandline: needle
# -asequence dna-align/BSNT_04459___ytkD.1.24716.seq
# -bsequence dna-align/BPUM_2697___ytkD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04459___ytkD-BPUM_2697___ytkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04459___ytkD-BPUM_2697___ytkD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04459___ytkD
# 2: BPUM_2697___ytkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 519
# Identity: 341/519 (65.7%)
# Similarity: 341/519 (65.7%)
# Gaps: 84/519 (16.2%)
# Score: 1099.0
#
#
#=======================================
BSNT_04459___ 1 ----ATGTACGAGTTTAAAGATTATTATCAGAATACTGTTCAGCTTTCCT 46
||||| |||||||||||||||||.|||||.||..||||.||||
BPUM_2697___y 1 ATGCATGTA----TTTAAAGATTATTATCATAATACGGTCAAGCTCTCCT 46
BSNT_04459___ 47 TTGACGATCAGCCTTTCTC-GGACAGCCCGAAGCATGTCTGGGTGATTTG 95
||||.||..|||||||.|| .|.|| .||.||||||||.||||..||.||
BPUM_2697___y 47 TTGAAGAGAAGCCTTTTTCAAGTCA-TCCAAAGCATGTTTGGGCCATCTG 95
BSNT_04459___ 96 CCGTTTTGGCGGCAAATGGCTTTTAACAGAACATGAGGACAGAGGCTATG 145
|||||.|...||.||||||||..|.||||||||||||||..|.|||||||
BPUM_2697___y 96 CCGTTATCAGGGGAAATGGCTGCTCACAGAACATGAGGATCGGGGCTATG 145
BSNT_04459___ 146 AGTTTCCAGGCGGGAAAGTAGAGCC-GATGGAGTGCGCAGAAGAGGCTGC 194
||||||||||.||||||||.||||| .|||.|| ..|||||..|.||.||
BPUM_2697___y 146 AGTTTCCAGGAGGGAAAGTTGAGCCAAATGAAG-AAGCAGACCAAGCCGC 194
BSNT_04459___ 195 GCTCCGGGA-AGTAAAGGAAGAGACGGGCG--------CGAGAGTCAAAA 235
..|.||.|| |.|.|| |||||||||||.| ||.||.|
BPUM_2697___y 195 TATACGTGAGATTCAA-GAAGAGACGGGTGCTGTTGTTCGTGAAT----- 238
BSNT_04459___ 236 GCCTCAAGTATCTCGGACAGTATAAAGTTCTCGGAAAAGAAAAAGTGATT 285
|.|.||||.|.||.||.|||.|.||.||.||.|.||||||.||.||.
BPUM_2697___y 239 ---TAACGTATATTGGCCAATATCAGGTGCTAGGTAGAGAAAAGGTCATC 285
BSNT_04459___ 286 GTAAAAAATATATATTTTGCAGATATAGAAAAGCTTGAAAAGCAGGCTGA 335
|||||||||||.|||||.||.|||||.||||.|||.||.|||||.|....
BPUM_2697___y 286 GTAAAAAATATTTATTTCGCTGATATTGAAAGGCTCGAGAAGCAAGACAC 335
BSNT_04459___ 336 TTACTTTGAAACGAAAGGCCCGGTTTTGTTTCAC-GAGCTGCC--GGAGA 382
.||.||||||||||||||.||.|||.| ||||.| ||..|||| ||
BPUM_2697___y 336 GTATTTTGAAACGAAAGGACCTGTTCT-TTTCGCAGACTTGCCAAGG--- 381
BSNT_04459___ 383 ACCTTTCC--CGC----AATAAAAAATTCAGCTTTATTATGAAGGATTCC 426
||| ||| |||||.||.|||||.|||||||||||.|||...
BPUM_2697___y 382 -----TCCATCGCAAAAAATAAGAATTTCAGTTTTATTATGAAAGATGAT 426
BSNT_04459___ 427 GT------------TCTTCCGATCAGCTT-----GAAAA-AACTGAAAGA 458
|| ||| ||||| ||||| |||
BPUM_2697___y 427 GTGTTAAGACAAAGTCT-------AGCTTATTTAGAAAAGAAC------- 462
BSNT_04459___ 459 ATCTGGATGGATTGAATAA 477
||.|.||||...|||
BPUM_2697___y 463 ----GGTTTGATTCGTTAA 477
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