Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04466 and BPUM_2706
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:01
# Commandline: needle
# -asequence dna-align/BSNT_04466___ytjA.1.24716.seq
# -bsequence dna-align/BPUM_2706___ytjA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04466___ytjA-BPUM_2706___ytjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04466___ytjA-BPUM_2706___ytjA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04466___ytjA
# 2: BPUM_2706___ytjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 236
# Identity: 170/236 (72.0%)
# Similarity: 170/236 (72.0%)
# Gaps: 19/236 ( 8.1%)
# Score: 608.5
#
#
#=======================================
BSNT_04466___ 1 ATGAAAACCCTATTCATCGCTCTG-ATCAGAGG---ATATCAAAAATTCA 46
||||||....|.||.|||| | ||||.|.| .||||||||||..|
BPUM_2706___y 1 ATGAAACAAATTTTTATCG----GCATCATACGCTTTTATCAAAAATGTA 46
BSNT_04466___ 47 TCTCGCCCCTGACACCGCCAACGTGCCGCTTTTATCCGACCTGTTCCCAA 96
|.||.||.||.||||||||.|..|||||.||||||||.||.||.||..|.
BPUM_2706___y 47 TTTCCCCTCTTACACCGCCTAGCTGCCGGTTTTATCCAACATGCTCAAAC 96
BSNT_04466___ 97 TATGGAATCGAAGCGATTAAAACACATGGCGCTTTAAAAGGCGGATGGCT 146
||.||..|.||||||||.|||||.||||||||||||||||||||.|||||
BPUM_2706___y 97 TACGGGCTAGAAGCGATCAAAACGCATGGCGCTTTAAAAGGCGGCTGGCT 146
BSNT_04466___ 147 GACAATCAAACGGATTTTGAAATGCCACCCGTTCCATCCGGGAGGAGTCG 196
.||.||||||||||||||.|||||.||.|||.|||||||.||.||..|||
BPUM_2706___y 147 CACCATCAAACGGATTTTAAAATGTCATCCGCTCCATCCTGGCGGCATCG 196
BSNT_04466___ 197 ATCCCGTTC--CTGAAAA--GAAACAAAAACATTAA 228
||||.||.| |.||||| ||||.|.||
BPUM_2706___y 197 ATCCTGTCCCGCCGAAAAAGGAAAAATAA------- 225
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