Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04482 and BPUM_2716

See Amino acid alignment / Visit BSNT_04482 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_04482___menB.1.24716.seq
#    -bsequence dna-align/BPUM_2716___menB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04482___menB-BPUM_2716___menB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04482___menB-BPUM_2716___menB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04482___menB
# 2: BPUM_2716___menB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 821
# Identity:     655/821 (79.8%)
# Similarity:   655/821 (79.8%)
# Gaps:           7/821 ( 0.9%)
# Score: 2588.0
# 
#
#=======================================

BSNT_04482___      1 ATGGC---TGAATGGAAAACAAAACGGACATACGATGAGATATTGTATGA     47
                     |||||   |||||||.||||..|.||...|||.||.||.||.||.|||||
BPUM_2716___m      1 ATGGCTATTGAATGGCAAACTGAGCGTCAATATGACGAAATTTTATATGA     50

BSNT_04482___     48 AACGTATAATGGCATTGCAAAAATAACAATCAACCGACCTGAGGTACATA     97
                     ||||||.|||||.||||||||.||.||.||.||.||.||..|.|||||||
BPUM_2716___m     51 AACGTACAATGGGATTGCAAAGATTACGATTAATCGTCCACACGTACATA    100

BSNT_04482___     98 ATGCGTTTACCCCTAAAACGGTTGCTGAAATGATTGATGCGTTTGCTGAC    147
                     |.||||||||.|||||.||.||...||||.|.||||||||.|||.|....
BPUM_2716___m    101 ACGCGTTTACACCTAAGACTGTGAGTGAATTAATTGATGCATTTTCGCGT    150

BSNT_04482___    148 GCAAGAGACGACCAAAACGTTGGGGTTATCGTGCTTGCCGGTGCAGGGGA    197
                     ||..|.||..|...|||.|||||.||.|||||.|||||.|||||.||.|.
BPUM_2716___m    151 GCTCGTGATAATTCAAATGTTGGTGTGATCGTACTTGCAGGTGCTGGCGG    200

BSNT_04482___    198 CAAGGCATTTTGTTCTGGCGGAGACCAAAAAGTGCGCGGCCACGGTGGAT    247
                     |||.|||||.||||||||.||||||||||||||||||||.||.||.||.|
BPUM_2716___m    201 CAAAGCATTCTGTTCTGGTGGAGACCAAAAAGTGCGCGGTCATGGCGGTT    250

BSNT_04482___    248 ATGTAGGAGACGACCAGATCCCGCGTCTTAACGTATTGGATCTT-CAGCG    296
                     ||||||||||||||||.||.||||||||.||.|||.|||| ||| |||||
BPUM_2716___m    251 ATGTAGGAGACGACCAAATTCCGCGTCTAAATGTACTGGA-CTTACAGCG    299

BSNT_04482___    297 TTTAATCCGCGTCATCCCGAAACCGGTTGTTGCGATGGTGTCCGGATATG    346
                     |||.||.||.|||||.||.|||||.||||||||.||||||.|.||.||||
BPUM_2716___m    300 TTTGATTCGTGTCATTCCAAAACCTGTTGTTGCAATGGTGGCTGGTTATG    349

BSNT_04482___    347 CGATTGGCGGAGGCCATGTGCTTCACATCGTATGTGACTTGACAATTGCT    396
                     |.||.|||||.||.||.||.|||||.||.|||||||||.||||||||||.
BPUM_2716___m    350 CAATCGGCGGCGGACACGTTCTTCATATTGTATGTGACCTGACAATTGCA    399

BSNT_04482___    397 GCGGACAACGCAATTTTTGGACAAACAGGCCCTAAAGTTGGAAGCTTCGA    446
                     ||.||.||.||..|.|||||||||||.||.||.|||||.||.|||||.||
BPUM_2716___m    400 GCAGATAATGCGGTATTTGGACAAACTGGTCCAAAAGTAGGCAGCTTTGA    449

BSNT_04482___    447 TGCAGGTTACGGTTCTGGCTACCTGGCTCGAATTGTAGGACATAAAAAAG    496
                     |||.|||||.|||||.||||||||.||.||.||||||||.|||||.||||
BPUM_2716___m    450 TGCTGGTTATGGTTCAGGCTACCTTGCACGTATTGTAGGTCATAAGAAAG    499

BSNT_04482___    497 CACGTGAAATCTGGTACCTATGCCGTCAGTACAACGCACAGGAAGCACTG    546
                     |..|.||||||||||||.||||||||||.|||||.|||||.|||||.||.
BPUM_2716___m    500 CGAGAGAAATCTGGTACTTATGCCGTCAATACAATGCACAAGAAGCGCTT    549

BSNT_04482___    547 GACATGGGTCTTGTCAACACAGTCGTTCCTTTGGAACAGCTTGAAGAAGA    596
                     ||.|||||.||||||||.|||||.||.||.||.||.||||||||||||||
BPUM_2716___m    550 GATATGGGCCTTGTCAATACAGTTGTACCATTAGAGCAGCTTGAAGAAGA    599

BSNT_04482___    597 AACGATTAAATGGTGTGAAGAAATGCTTGAAAAAAGCCCGACCGCACTGC    646
                     |||..|.||.||||||||.||.|||||.|||||.||||||||.||..|.|
BPUM_2716___m    600 AACAGTGAAGTGGTGTGAGGAGATGCTAGAAAAGAGCCCGACTGCTTTAC    649

BSNT_04482___    647 GCTTTCTT-AAAGCTGCGTTTAACGCGGACACAGACGGACTTGCTGGAAT    695
                     | .||||| ||.|||||.|||||.||.||.||.||.|||.|.||||||||
BPUM_2716___m    650 G-ATTCTTGAAGGCTGCATTTAATGCAGATACGGATGGATTAGCTGGAAT    698

BSNT_04482___    696 TCAGCAGTTTGCAGGGGATGCTACCCTTCTTTACTACACAACAGATGAAG    745
                     |||.||.||||||||.|||||.||.||||||||.||||||||||||||||
BPUM_2716___m    699 TCAACAATTTGCAGGAGATGCGACACTTCTTTATTACACAACAGATGAAG    748

BSNT_04482___    746 CAAAAGAAGGCCGTGATTCCTTTAAGGAAAAACGCAAACCTGATTTCGGA    795
                     ||||||||||.||.|||||||||||||||||||||||.||.||.|||||.
BPUM_2716___m    749 CAAAAGAAGGACGCGATTCCTTTAAGGAAAAACGCAAGCCGGACTTCGGT    798

BSNT_04482___    796 CAGTTCCCTCGTTTCCCGTGA    816
                     ||||||||.||||||||.|||
BPUM_2716___m    799 CAGTTCCCGCGTTTCCCTTGA    819


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