Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04557 and BPUM_2725

See Amino acid alignment / Visit BSNT_04557 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:04
# Commandline: needle
#    -asequence dna-align/BSNT_04557___yuaJ.1.24716.seq
#    -bsequence dna-align/BPUM_2725.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04557___yuaJ-BPUM_2725.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04557___yuaJ-BPUM_2725.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04557___yuaJ
# 2: BPUM_2725
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 647
# Identity:     375/647 (58.0%)
# Similarity:   375/647 (58.0%)
# Gaps:         139/647 (21.5%)
# Score: 874.5
# 
#
#=======================================

BSNT_04557___      1 ATGAATCAATCTAAGCAACTGGTTCGCCTTATTGAAATTGCCATTATGAC     50
                     |||.|.|||||.||.|||.||||.||.||.||.|||||.||.||||||||
BPUM_2725          1 ATGCAGCAATCAAACCAATTGGTACGACTGATGGAAATCGCAATTATGAC     50

BSNT_04557___     51 AGCGGCAGCCGTTATTTTAGACATT--GTCTCAGGAATGTTTCTTAGCAT     98
                     ..|....||..||.|.||||  |||  .|.|||||..|.|||.|.||.||
BPUM_2725         51 TTCACTTGCACTTGTATTAG--ATTACTTATCAGGTCTCTTTTTAAGAAT     98

BSNT_04557___     99 GCCTCAAGGAGGCTCGGTCT--CCATCATGATGATTCCGATCTTTTTAAT    146
                     |||..|.||.||.||  |||  |..|.||.|||||.||..||.||.|.||
BPUM_2725         99 GCCGAATGGCGGATC--TCTTGCGCTGATTATGATCCCCGTCATTCTTAT    146

BSNT_04557___    147 TTCGTTTCGCTGGGG--TGTCAAAGCAGGT--------------CTTACT    180
                     .||..||.|.|||||  |.|| ||.|.|||              ||||.|
BPUM_2725        147 GTCTATTAGATGGGGAATATC-AACCGGGTTTATCATTGGCGTGCTTATT    195

BSNT_04557___    181 ACAGG--TTTGTTGACAGGTCTAGTACAAATAGCAATCGGAAACTTGTTT    228
                     .||||  ||      |||  |||  |..|||.||         |.|.||.
BPUM_2725        196 GCAGGCCTT------CAG--CTA--ATGAATGGC---------CCTATTA    226

BSNT_04557___    229 GCTCAACATCCTGTACAGCTATTGTTAGATTACATTGTCGCTTTCGCAGC    278
                     .|.|.||| ||.||.||...|||..|.|||||   |.|||   |||||.|
BPUM_2725        227 TCGCTACA-CCAGTTCAAGGATTCCTCGATTA---TTTCG---TCGCATC    269

BSNT_04557___    279 AATCGGCA------TAAGCGG-CTGTTTCGCTTCTTCTG-TCCGTAAAGC    320
                     ..|.|.||      ||||||| ||.||| |||...| || |....|||||
BPUM_2725        270 TGTTGTCATTTCCCTAAGCGGCCTATTT-GCTGGAT-TGATTAAAAAAGC    317

BSNT_04557___    321 C--GCTGTATCAAAAACAAAAG--GGAA---------ATTGA--------    349
                     |  .|.|.|||||||.|.||||  |.||         ||| |        
BPUM_2725        318 CATTCAGGATCAAAAGCGAAAGCAGCAATTCTTCTATATT-ACTTTATCC    366

BSNT_04557___    350 ----TTGTTTCAGTGGTCAGCGCAGTTT-TTATCGGCAGTTTGCTGCGCT    394
                         |||||.||           ||||| ||     |||..||.||    
BPUM_2725        367 GTATTTGTTGCA-----------AGTTTCTT-----CAGACTGTTG----    396

BSNT_04557___    395 ATGCCGCGCATGTC---ATTTCAGGAGCTGTGT--TTTTCGGCAGCTTTG    439
                            .||| ||   |||||.||.|.|||.|  ||||| .||| |.||
BPUM_2725        397 -------ACAT-TCTTTATTTCTGGTGTTGTTTTCTTTTC-TCAG-TATG    436

BSNT_04557___    440 CTCCAAAAGGAACACC-GGTATGGATTTATTCTTTAACTTATAA-TGCGA    487
                     |.|||||||||||.|| ||| |||.||||.|||||||.|||||| .|| |
BPUM_2725        437 CACCAAAAGGAACGCCAGGT-TGGGTTTACTCTTTAATTTATAACAGC-A    484

BSNT_04557___    488 CTTACATGGTTCCTTCATTCATTATTTGTGCA--ATTGTCCTATGTTTAT    535
                     |.||.||||||||||||||.||||||  ||||  ||.||.||   ||...
BPUM_2725        485 CATATATGGTTCCTTCATTTATTATT--TGCAGTATCGTTCT---TTGCA    529

BSNT_04557___    536 TATTTATGACA---GCACCCCGTCTGCTTAAAAGTGACAAAGCGTAA    579
                     ||.|.||..||   |||.|.|||.||.||.....|.|||||...|||
BPUM_2725        530 TACTCATACCAAGTGCATCTCGTTTGGTTTTTCCTCACAAAAAATAA    576


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