Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04558 and BPUM_2727

See Amino acid alignment / Visit BSNT_04558 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:04
# Commandline: needle
#    -asequence dna-align/BSNT_04558___yuaI.1.24716.seq
#    -bsequence dna-align/BPUM_2727.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04558___yuaI-BPUM_2727.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04558___yuaI-BPUM_2727.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04558___yuaI
# 2: BPUM_2727
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 646
# Identity:     316/646 (48.9%)
# Similarity:   316/646 (48.9%)
# Gaps:         215/646 (33.3%)
# Score: 656.0
# 
#
#=======================================

BSNT_04558___      1 ---ATGGTAA------CTGTACGTGAAGCGAAGTTAGAGGATA----TAA     37
                        |.|||.|      ||||||            .|.|.||||    |||
BPUM_2727          1 ATGAAGGTGAGACATGCTGTAC------------AACAAGATATTCCTAA     38

BSNT_04558___     38 AGGACATTGCAAAAGTGCATGTAGACAGCTGGAGGACAACATACCACGAA     87
                     |    ||.||..||.|.|||||..|.||||||..|||.||.||.||.|..
BPUM_2727         39 A----ATCGCCGAAATACATGTGAAGAGCTGGCAGACGACTTATCAAGGT     84

BSNT_04558___     88 ATT----ATCCCGATT-----GATTATTTAAACAGCCTGAACTATAAG--    126
                     |||    |||..||||     |||..|||||        ||.||.|||  
BPUM_2727         85 ATTATCAATCAGGATTATTTGGATGGTTTAA--------AAATAGAAGAG    126

BSNT_04558___    127 -GAATTTGAAGACAAATGGA----AAAGTCGCTCGTTAAAAGGA-GTATT    170
                      ||    |||||.|..||||    ||.|||.|   ||.||.||| |  ||
BPUM_2727        127 CGA----GAAGAGAGCTGGAGAAGAATGTCAC---TTGAAGGGACG--TT    167

BSNT_04558___    171 TGTTGCTCAGGA---CGAAATGGATTCAGTATTCGGCTTTGCTTCATTTG    217
                     |||.||..|.||   |||...|      |||||.||.||||||||.||||
BPUM_2727        168 TGTCGCAGAAGATGCCGAGGGG------GTATTTGGTTTTGCTTCTTTTG    211

BSNT_04558___    218 GACCTATTCGCTCTGAACAA------GA-AGG--------CTATGACGGC    252
                     ||            .|||||      || |||        .|||||.||.
BPUM_2727        212 GA------------AAACAACGTGATGAGAGGTATCCAACATATGATGGA    249

BSNT_04558___    253 GAGTTATACG----CTATTTATCTTCTGGAAGAGCGCCAGCGGCAAGGTG    298
                     ||..|.||||    ||||||||    ||.||.||...|||.|...|||.|
BPUM_2727        250 GAACTTTACGCGATCTATTTAT----TGCAAAAGAAACAGAGATCAGGAG    295

BSNT_04558___    299 CAGGCAGGGCGCTCTTAGCAAAAGGAGCGGAGTATTTGCTTCAACATGGC    348
                     ||||.|..||..|..|.|||.||||||.|...|||||..|..|..|.||.
BPUM_2727        296 CAGGAATTGCTTTAATTGCAGAAGGAGTGCGTTATTTAATAGAGAAAGGG    345

BSNT_04558___    349 TTTTCAAGTATGTTTGTTTGGGTTATTGAGCAGAATCCCTCG----ATTA    394
                     |.|..||.|||..|..|.|||||..||||.||.||   ||||    |..|
BPUM_2727        346 TATCAAAATATACTACTGTGGGTATTTGAACAAAA---CTCGGCAAAGCA    392

BSNT_04558___    395 TATTTTATCAGGCCTATTCACCTGAAAGAGTAGCGGAGGACAAC-----T    439
                     | ||||||||              ||||..|         ||||     |
BPUM_2727        393 T-TTTTATCA--------------AAAGCTT---------CAACCTCATT    418

BSNT_04558___    440 TTGAAATTGCCGG--AGT-----------------AAG---GCTGAAAGA    467
                     |||...||.||.|  |||                 |||   |.|||||.|
BPUM_2727        419 TTGTCGTTACCAGCCAGTTCGAGCTGGCTGGCGAGAAGCATGATGAAATA    468

BSNT_04558___    468 -AGTA--GGT--------CTTG-----GCTGGCCGGATCT----------    491
                      .|||  |||        ||||     ..||.||  ||||          
BPUM_2727        469 GGGTACGGGTGGGAGCTACTTGTATTAAATGACC--ATCTACACCGAATT    516

BSNT_04558___    492 -----TTCAGCTT----TAAAAACACTTCTTAACAGATAA------    522
                          .|||||||    |||.||       |.|.|||.||      
BPUM_2727        517 AAATCGTCAGCTTCCAATAATAA-------TGAGAGAAAAATGTGA    555


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