Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04561 and BPUM_2733

See Amino acid alignment / Visit BSNT_04561 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:05
# Commandline: needle
#    -asequence dna-align/BSNT_04561___yuaE.1.24716.seq
#    -bsequence dna-align/BPUM_2733___yuaE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04561___yuaE-BPUM_2733___yuaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04561___yuaE-BPUM_2733___yuaE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04561___yuaE
# 2: BPUM_2733___yuaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 553
# Identity:     327/553 (59.1%)
# Similarity:   327/553 (59.1%)
# Gaps:         104/553 (18.8%)
# Score: 883.5
# 
#
#=======================================

BSNT_04561___      1 ------------------------ATG---ATGAGTATCTTTAATGAAGC     23
                                             |||   ||||||.|.||..||||.||
BPUM_2733___y      1 ATGTTAAAATTTGATCTTGAGGTGATGAAAATGAGTTTATTACATGATGC     50

BSNT_04561___     24 CAGATTAGAAACGTGGAACGAATTGAAAGGACTTTCTG-ACGAAAAGC--     70
                     .|||..||||..||||.|.||.|||.||||    |.|| |||||.|.|  
BPUM_2733___y     51 AAGACAAGAATTGTGGCAAGAGTTGCAAGG----TTTGAACGAAGAACAA     96

BSNT_04561___     71 -TGAATCAAAAGCCTTCTGCTGAAGAATGGAGCATACGGGAAGTTCTTGA    119
                      ||||||||||....||||.|||....|||||.||.|..||.||....||
BPUM_2733___y     97 TTGAATCAAAAATTATCTGATGATACTTGGAGTATTCAAGAGGTGGCAGA    146

BSNT_04561___    120 CCATTTGAAAAAAATCGATATGACC-----GCA-CAAAAAA------TGT    157
                     .|||||.|||||.||     .||||     ||| |||||.|      ||.
BPUM_2733___y    147 TCATTTAAAAAAGAT-----GGACCTCGTGGCAGCAAAACATCTAGCTGC    191

BSNT_04561___    158 TGAAGGAACGTGTAAAGGACGCTCCGATTAAAGAAATTGAAGAAAAATCG    207
                     ||||||||     |||  |.||.||||||||||||..|||...|||..||
BPUM_2733___y    192 TGAAGGAA-----AAA--AAGCACCGATTAAAGAATATGAGCCAAAGCCG    234

BSNT_04561___    208 CTTGAGGTCGCACAGGACAGAAATAATAAACGGAAAGCCCCGAGTCATCT    257
                     .|.||..|.|||.||||..|...||..|||..||..||.||.|||..|.|
BPUM_2733___y    235 GTGGAAATGGCAGAGGATCGTTCTAGAAAAGCGACTGCGCCTAGTATTGT    284

BSNT_04561___    258 TGAGCCT--GCGCATG-ATTTTA---TTTCAGGCAGCCAAATGAAACGTG    301
                     |||.|||  |||||.| ||.|.|   .|.||  ||.|.|||.||    ||
BPUM_2733___y    285 TGAACCTGAGCGCAAGCATGTGACACCTACA--CACCTAAAAGA----TG    328

BSNT_04561___    302 AGCTTGATGTGGTAAGAGAGCAGCTGACTGCTGCGATTGCCTCTCTGAA-    350
                     ||||||||...|.|.|.||||||||.|.|    |.|.|   |||.|.|| 
BPUM_2733___y    329 AGCTTGATACAGCACGTGAGCAGCTCAAT----CAAAT---TCTATCAAC    371

BSNT_04561___    351 ------AGAAGAAGATTTTGAAAGAGTG--CTTCCGCATCCTGTGTTTCA    392
                           .||.||.|||||  .|||.|||  .||.|.||.|||||||||.|
BPUM_2733___y    372 GTTTACTGAGGATGATTT--CAAGCGTGTCATTGCACACCCTGTGTTTGA    419

BSNT_04561___    393 AGAGCTGACTGTCAGACAGTGGATC--GATTTTATCGGC-CATCATGAAA    439
                     |||..|..||.|.|..||.|  |||  |||||||||||| || |||||||
BPUM_2733___y    420 AGAATTATCTCTTAAGCAAT--ATCTTGATTTTATCGGCGCA-CATGAAA    466

BSNT_04561___    440 AACGGCACCTCAGCCAAATGAAAGAAATTAAAGAAAAGATAGAAAGGGCC    489
                     ||||.||..||...|||||.|||||||||||||||.||.||.||      
BPUM_2733___y    467 AACGCCATATCCATCAAATCAAAGAAATTAAAGAACAGCTATAA------    510

BSNT_04561___    490 TGA    492
                        
BPUM_2733___y    510 ---    510


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