Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04567 and BPUM_2735
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:07
# Commandline: needle
# -asequence dna-align/BSNT_04567___gbsA.1.24716.seq
# -bsequence dna-align/BPUM_2735___gbsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04567___gbsA-BPUM_2735___gbsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04567___gbsA-BPUM_2735___gbsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04567___gbsA
# 2: BPUM_2735___gbsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1511
# Identity: 1094/1511 (72.4%)
# Similarity: 1094/1511 (72.4%)
# Gaps: 79/1511 ( 5.2%)
# Score: 3850.5
#
#
#=======================================
BSNT_04567___ 1 ATGAGTCAAACATTATTCATTGACGGAGAATGGATCAGTGCCGAAAAAG- 49
||||||||||||.||||.||.||.|||.|||||.|..|.||| |||||
BPUM_2735___g 1 ATGAGTCAAACACTATTTATAGATGGACAATGGGTTGGCGCC--AAAAGC 48
BSNT_04567___ 50 ---AACAGATCCGCAG--TATTATCAACCCATTTAATCAAGAAGAAATTG 94
.||| |||.| |||.|||||.||||||||||||||||..||.|
BPUM_2735___g 49 GGCGACA----CGCGGGATATCATCAATCCATTTAATCAAGAAGTGATCG 94
BSNT_04567___ 95 CAACTGTAAGCGAGGGAGGGCGAGAGGA---------CGCCATCAAAGCA 135
|.|..||.||.||.|||....||.|.|| ||||||.||||||
BPUM_2735___g 95 CGAAGGTGAGTGAAGGATCAAGAAATGACGCGCAGCTCGCCATTAAAGCA 144
BSNT_04567___ 136 ATCGCAGCCGCACGCAGAGCATTTGACAAAGGAGAATGGTCA---TCGCT 182
||..|.|.|||.||.||..||||.||.|||.|| |.||
BPUM_2735___g 145 ---------GCGAGAAAAGCCTTCGATCAAGGTGACTGGGCAAACTTGC- 184
BSNT_04567___ 183 ATCCGGGCTTGAACGCGGAAAAATTGTTCTGAAAATTGCGGAATTAATCA 232
|.||..|||||.|.|||||.||.||..|.||.||.||.|||||.||.|
BPUM_2735___g 185 --CTGGAATTGAAAGAGGAAATATGGTGTTTAAGATGGCTGAATTGATTA 232
BSNT_04567___ 233 GACGTGATCTTGAGGAGCTGGCTGAGCTTGAATCTCTTGATACAGGAAAA 282
|||||||||||||.||.||.||..|..|.|||||.|||||||||||.|||
BPUM_2735___g 233 GACGTGATCTTGATGAACTAGCCAAATTGGAATCGCTTGATACAGGCAAA 282
BSNT_04567___ 283 ACACTCGAAGAAAGCAAGGCCGATATGGACGATATCGCCAATGTTTTTCA 332
|||.|.||.||||||||.||.||||||||||||||.||.||.||.||.||
BPUM_2735___g 283 ACATTAGAGGAAAGCAAAGCAGATATGGACGATATTGCGAACGTGTTCCA 332
BSNT_04567___ 333 ATATTACGC-CGGCTTGGCAGACAAAGATGGCGGAGAGATCGTTTCATCT 381
||||||.|| .||||| ||.||||||||||||||.||.|||.||.||||.
BPUM_2735___g 333 ATATTATGCAGGGCTT-GCTGACAAAGATGGCGGGGAAATCATTGCATCA 381
BSNT_04567___ 382 CCGATTCCTGATTCAGAAAGCAAAATTATTAGAGAGCCAATCGGGGTTTG 431
||.|||||..|.||..|||||.||.|..|.||.|||.|..|.||.||.||
BPUM_2735___g 382 CCAATTCCGAACTCGAAAAGCGAATTGGTCAGGGAGGCTGTTGGTGTATG 431
BSNT_04567___ 432 CGGCCAGATCACTCCATGGAATTATCCGCTCCTTCAAGCGAGCTGGAAAA 481
|||.||.||.|||||.|||||||||||..|.||||||||.||||||||||
BPUM_2735___g 432 CGGGCAAATTACTCCTTGGAATTATCCATTGCTTCAAGCAAGCTGGAAAA 481
BSNT_04567___ 482 TCGCCCCTGCACTGGCTGCAGGAAACACAATCGTCATGAAGCCGAGTGAG 531
||||.|||||.||.||.||.||.||.||.|||||..|.|||||.|||||.
BPUM_2735___g 482 TCGCTCCTGCTCTTGCGGCGGGGAATACCATCGTATTAAAGCCAAGTGAA 531
BSNT_04567___ 532 ATTACGCCGCTGACGACAATCAAAGTCTTTAAGCTGATGGAAGAAGCCGG 581
||.||.|||||.||.||.||||||||.||.||.||.|||||||||||.||
BPUM_2735___g 532 ATCACACCGCTCACCACGATCAAAGTATTCAAACTCATGGAAGAAGCGGG 581
BSNT_04567___ 582 TGTACCAAAAGGTGTCGCAAATCTTGTCCTTGGACCGGGAGCCACAGTGG 631
..|.|||..|||.||.|||||.||.|||||||||||.||.||.||.||.|
BPUM_2735___g 582 CATTCCATCAGGAGTGGCAAACCTAGTCCTTGGACCAGGTGCAACGGTTG 631
BSNT_04567___ 632 GCGACGAGCTTGCCGTAAA----CAAAGACGTCGATTTGATTTCGTTTAC 677
|.||.||||||||.||.|| ||| ||||||||||||||.|||||
BPUM_2735___g 632 GTGATGAGCTTGCTGTGAATGATCAA----GTCGATTTGATTTCATTTAC 677
BSNT_04567___ 678 GGGCGGAATTGAAACAGGCAAAAAAATCATGCGGGCGGCAAGCGGAAACG 727
.|||||.||||||||||||||.|||||.||||.||..||.|||||.||.|
BPUM_2735___g 678 AGGCGGTATTGAAACAGGCAAGAAAATTATGCAGGGAGCCAGCGGGAATG 727
BSNT_04567___ 728 TCAAAAAAATCGCCCTTGAACTTGGCGGGAAAAACCCAAATATTGT-TTT 776
|.||||||||.||||||||.||||||||.||.||.||.|||||||| |||
BPUM_2735___g 728 TGAAAAAAATAGCCCTTGAGCTTGGCGGAAAGAATCCGAATATTGTGTTT 777
BSNT_04567___ 777 CAAGGACGCGGATTTAGAAGTTGCGGTTGATCAGGCCTTAAACGCTGTAT 826
||| ||.||.||||||||.||.||||||||.|||||..|.||.|||||.|
BPUM_2735___g 778 CAA-GATGCTGATTTAGACGTAGCGGTTGACCAGGCAATGAATGCTGTGT 826
BSNT_04567___ 827 TTTTCCACGCCGGCCAAGTATGCTCTGCAGGTTCCCGCTTGCTTGTTGAG 876
|||||||.||.||.||||||||.||.||||||||.||.|||||.||.||.
BPUM_2735___g 827 TTTTCCATGCAGGGCAAGTATGTTCAGCAGGTTCACGTTTGCTAGTGGAA 876
BSNT_04567___ 877 GATGCCATTCATGATCAATTTTTGGCGGAGCTGGTCAAACGGGCAAAACG 926
||..|||||||||||.|||||.|.|..||.|||||.||.|||.|.|||..
BPUM_2735___g 877 GAATCCATTCATGATGAATTTCTAGAAGAACTGGTGAAGCGGACGAAAAA 926
BSNT_04567___ 927 CATAAAACTCGGAAACGGTTTTCATGCTGAGACAGAAAGCGGTCCGCTTA 976
.||.||.||.||||.|||.|||.|||..||.||..|||||||.||.||.|
BPUM_2735___g 927 AATCAAGCTAGGAAGCGGCTTTGATGAAGAAACCCAAAGCGGCCCACTCA 976
BSNT_04567___ 977 TTTCGGCGGAGCACAGGGCAAAGGTAGAAAAATATGT-AGAGATCGGAAT 1025
|.||.||.|||||..|.|.|||.|||||||||||.|| || .||.||..|
BPUM_2735___g 977 TCTCAGCTGAGCATCGAGAAAAAGTAGAAAAATACGTCAG-CATTGGGCT 1025
BSNT_04567___ 1026 AGAGGAAGGCGCGAAGCTGGAGACAGGAGGCAAACGCCCGGA---AGACC 1072
|||.||||||||.||..|.||.|||||.||.|||.|.||.|| |||
BPUM_2735___g 1026 AGATGAAGGCGCCAAATTAGAAACAGGTGGAAAAAGACCTGACGCAGA-- 1073
BSNT_04567___ 1073 CTGCGCTTCAAAACGGCTTTTTCTA--TGAACCTACTATTTTCTCAAACT 1120
.|.||||..|||.||.||.||||| || ||.||.|||||||||..||
BPUM_2735___g 1074 -GGAGCTTTCAAATGGGTTCTTCTACTTG--CCAACGATTTTCTCAGGCT 1120
BSNT_04567___ 1121 GTAATTCTGACATGAGAATCGTTCAGGAAGAGGTTTTCGGTCCGGTATTG 1170
|.|..||.||.|||.|.||.||.||.|||||.||.||.||.||.||||||
BPUM_2735___g 1121 GCACGTCAGAGATGCGGATTGTCCAAGAAGAAGTCTTTGGCCCAGTATTG 1170
BSNT_04567___ 1171 ACAGTCGAAACCTTCAGCTCTGAAGAAGAGGTAATCGAGCTTGCGAATGA 1220
|||||.|||.|||||.|..|.||.|||||.|||||.|||||.||.||.||
BPUM_2735___g 1171 ACAGTTGAATCCTTCCGTACAGAGGAAGAAGTAATTGAGCTGGCAAACGA 1220
BSNT_04567___ 1221 TACCATCTATGGCTTGGCTGGAGCGGTATGGTCAAAAGACATTGAAAAGT 1270
|||.||.|||||.||.||.||.||.||.|||||.|..||.||....|||.
BPUM_2735___g 1221 TACGATTTATGGATTAGCAGGGGCCGTGTGGTCTACTGATATCAGCAAGG 1270
BSNT_04567___ 1271 GCGAACGGGTAGCAGCCCGC-------TTGAGAATGGGAACCGTTTGGAT 1313
.||||.|.|| ||| ||.|||.||||.||.||||||||
BPUM_2735___g 1271 CCGAAAGAGT-------CGCTCGTCAATTAAGATTGGGCACAGTTTGGAT 1313
BSNT_04567___ 1314 CAACGATTTTCATCCGTACTTTGCACAAGCGCCATGGGGCGGATATAAGC 1363
|||.|||||.|||||.||.|||||.|||||.||.|||||.||||||||||
BPUM_2735___g 1314 CAATGATTTCCATCCTTATTTTGCTCAAGCACCTTGGGGTGGATATAAGC 1363
BSNT_04567___ 1364 AATCCGGGTTCGGACGCGAGCTTGGAAAAATAGGCCTTGAAGAATACACA 1413
||||.||..|.|||||.|||.|.|||...|..||.||.||.|||||.|||
BPUM_2735___g 1364 AATCAGGTCTAGGACGTGAGTTAGGACGCACCGGGCTCGAGGAATATACA 1413
BSNT_04567___ 1414 GAAGTCAAACATGTATACCGCAATACAAAACCGGCAGCGGTTAACTGGTT 1463
||..|.||.||||||||.||.|||||||||||.|.|||||||.|.||||
BPUM_2735___g 1414 GAGCTGAAGCATGTATATCGTAATACAAAACCCGAAGCGGTTCATTGGT- 1462
BSNT_04567___ 1464 CAATTC-ATAA 1473
||| ||||
BPUM_2735___g 1463 ---TTCAATAA 1470
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