Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04568 and BPUM_2736

See Amino acid alignment / Visit BSNT_04568 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:11
# Commandline: needle
#    -asequence dna-align/BSNT_04568___yuaC.1.24716.seq
#    -bsequence dna-align/BPUM_2736___yuaC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04568___yuaC-BPUM_2736___yuaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04568___yuaC-BPUM_2736___yuaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04568___yuaC
# 2: BPUM_2736___yuaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity:     402/592 (67.9%)
# Similarity:   402/592 (67.9%)
# Gaps:          83/592 (14.0%)
# Score: 1344.5
# 
#
#=======================================

BSNT_04568___      1 ATGGATGAAAATCCA-GAATTTGCAGCTA-------TAGAAC-------A     35
                         |||||||..|| |||    ||||.|       .|||||       |
BPUM_2736___y      1 ----ATGAAAAAGCAGGAA----CAGCCACAAGCAGAAGAACGTATTTTA     42

BSNT_04568___     36 G--GCTCGGGATCTTGTTATTGACTCCATTGCTGAAACGATGGATCTTTA     83
                     |  |||...|||||.||.|||||.||.||.|||||||||||||||||.||
BPUM_2736___y     43 GCTGCTAAAGATCTAGTCATTGATTCAATAGCTGAAACGATGGATCTCTA     92

BSNT_04568___     84 CGGAATTACCCGCAGTGTCGGGATTTTATATGGGACGATGTAT----ATG    129
                     .||.|||||.||.||||..||.|||.|.||||||||.||||||    |||
BPUM_2736___y     93 TGGGATTACTCGAAGTGCTGGTATTCTCTATGGGACCATGTATTTAAATG    142

BSNT_04568___    130 AGGGATGAGATGACGCTTGACGAAATGCGTGAGGAGTTGCAAATGAGCAA    179
                     ||    ||.|||||.||.||.|||||||||||.|||.||||||||||.||
BPUM_2736___y    143 AG----GAAATGACACTGGATGAAATGCGTGAAGAGCTGCAAATGAGTAA    188

BSNT_04568___    180 ACCAAGCATGAGCACAGGCGTCAAAAAGCTTCAAGACTTAAATGTAGTGA    229
                     .||.||.|||||.||.||.||||||||.||.||||||.|.|||.|.||.|
BPUM_2736___y    189 GCCTAGTATGAGTACGGGTGTCAAAAAACTGCAAGACATGAATATTGTCA    238

BSNT_04568___    230 AAAAAACATTTCACCGGGGCATCCGTAAG----CATACATTTGTGGCTGA    275
                     ||||.||.||||||||.||   ||| |||    ||||..|||||.|||||
BPUM_2736___y    239 AAAAGACCTTTCACCGCGG---CCG-AAGAAAACATAGCTTTGTTGCTGA    284

BSNT_04568___    276 GAAGGATTTCTTTAAATTTTTCACAAATTTCTTTCCACCTAAATGGGAGC    325
                     .||.||.||.|||||.|||||||..||.||||||||.|..||||||||.|
BPUM_2736___y    285 AAAAGACTTTTTTAAGTTTTTCATGAACTTCTTTCCGCAAAAATGGGAAC    334

BSNT_04568___    326 GGGAGGTTCAAGTGAATGTAGCAGCGATCGAGGAAGCTCAA--GCTGATT    373
                     |.|||||..|.||||||.||||.||.||.||.|||||.|||  ||.|.||
BPUM_2736___y    335 GAGAGGTCGAGGTGAATTTAGCGGCAATTGAAGAAGCGCAAGTGCGGCTT    384

BSNT_04568___    374 TACAAAAGGTTTTATGCAAGGAAGATCTCGAT---------GAGG---AT    411
                       |||.||||            ||.||.||||         ||||   ||
BPUM_2736___y    385 --CAAGAGGT------------AGCTCACGATGATCAGTTGGAGGCACAT    420

BSNT_04568___    412 ATCAAAAATGAAGCACTGCAG-TTATATGATCAGCTGGAAAGCTCTAAAG    460
                     ||.|.|.|.|||||.|.|||| |.|| |||.|||||.||||||||.|||.
BPUM_2736___y    421 ATAAGAGAGGAAGCCCAGCAGCTCAT-TGAGCAGCTTGAAAGCTCAAAAT    469

BSNT_04568___    461 CTTACTATGACTGGCTGAAACGGCTTGCTGAA-TCGGTGCAGACCGGAGA    509
                     |.||.|||||||||||||.|||..|.|| ||| ||.||.||..|.||.||
BPUM_2736___y    470 CCTATTATGACTGGCTGAGACGATTAGC-GAACTCTGTTCATTCAGGGGA    518

BSNT_04568___    510 AATTTTTAAATTTATACCGAT-----CGAAACAAAGTAA---    543
                     |||.|||.|.|.|||.||.||     .||||.|||  ||   
BPUM_2736___y    519 AATCTTTGACTATATCCCAATTAATCAGAAAGAAA--AATAG    558


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