Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02138 and BPUM_2764
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_02138___xkdI.1.24716.seq
# -bsequence dna-align/BPUM_2764___yqbI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02138___xkdI-BPUM_2764___yqbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02138___xkdI-BPUM_2764___yqbI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02138___xkdI
# 2: BPUM_2764___yqbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity: 319/568 (56.2%)
# Similarity: 319/568 (56.2%)
# Gaps: 152/568 (26.8%)
# Score: 842.0
#
#
#=======================================
BSNT_02138___ 1 ATGAAAATAGCGGGA----------------------TTGAAACAGC-TG 27
||||||||.|..||| |.|||||||| ||
BPUM_2764___y 1 ATGAAAATTGATGGACTTGACCGGCTGCTTTCGCAGTTGGAAACAGCGTG 50
BSNT_02138___ 28 AACACGGC--ATTAAAAGAAGCGGCTTCAGGCGGTTTTTCCAGACAGGCG 75
.|| |||| ||||||| ||||..|.||.|||
BPUM_2764___y 51 TAC-CGGCGGATTAAAA-------------GCGGAATATCAAGA------ 80
BSNT_02138___ 76 TCCCGGTGGCTTGAGGA-GTGCGGGCAAGATTTTCTGGAGATCGTCCAAT 124
.|||||.||||| .|| ||.|.|||..||.||||.|||.|.||..
BPUM_2764___y 81 -----TTGGCTAGAGGACATG-GGCCTAGAGCTTTTGGACATCATTCAGG 124
BSNT_02138___ 125 CTGAACTCATC-AGCACACAAA--CGATTGATACAGAAAAACTGCTCAGT 171
.|||.||.||| ||.| ||| |..|.|||||||.....||.||.||.
BPUM_2764___y 125 ATGAGCTAATCAAGGA---AAATGCTGTCGATACAGGCCGGCTTCTTAGC 171
BSNT_02138___ 172 TCCTTTGAGAAAGGCGCAGAGGACAATCTCTGGATTGT------GCAAAG 215
||||||..|.||||.|...||||.|||| |||.| .||||
BPUM_2764___y 172 TCCTTTTCGCAAGGAGATAAGGAGAATC-----ATTTTCTCATATCAAA- 215
BSNT_02138___ 216 CGGCGGGCTTTCGCTTGAGGTGGGGACACAGCTTGATTACGCCTCATTTC 265
.||.||.||..|||||||.|||||.||.||||||||.||.|||||.|.|.
BPUM_2764___y 216 AGGTGGTCTCACGCTTGAAGTGGGAACGCAGCTTGAATATGCCTCCTATG 265
BSNT_02138___ 266 TTAATGACGGCCATTGGA---CGTCAAAACAAGATGTG-AGATGGGTGCC 311
|.||||||||.|||...| |.|||||...||| |.| |||||||||||
BPUM_2764___y 266 TCAATGACGGACATGCTACTTCTTCAAATGGAGA-GCGAAGATGGGTGCC 314
BSNT_02138___ 312 --------GGGGCGTTTTCAAGGCTCACGGTTTATTTATGATCCAGCGGC 353
|||.| |||...||.|||...||||||| ||..
BPUM_2764___y 315 TGGCAGATGGGCC--------GGCAGCCGCTTTGAATATGATC---CGAA 353
BSNT_02138___ 354 TTCA---ACGGGAA-------TGGCGCTCAAGAGAAAATGGATACCGGGA 393
|.|| ||.|||| ||.|.||| ||||||||...|||
BPUM_2764___y 354 TGCAAAGACAGGAATGATGCTTGCCTCTC-------AATGGATAGATGGA 396
BSNT_02138___ 394 ACGGGCTACTGGGATCATG----CACTGCTTTTATATGAACAGCTGTTTG 439
|..|||||||||||||||| || ||||| |||||.||..||||||
BPUM_2764___y 397 AATGGCTACTGGGATCATGCTGTCA-TGCTT---TATGAGCAAATGTTTG 442
BSNT_02138___ 440 AAAAATCGTTG----GAAAGC----AAACTG-------CGCCA------G 468
||.|||||.|| |||||| ||.||| ||.|| |
BPUM_2764___y 443 AACAATCGCTGGATCGAAAGCTTCAAAGCTGGTTCGATCGACATTTTGGG 492
BSNT_02138___ 469 TGGCTGAAGAAGCTGTAA 486
.|| |||
BPUM_2764___y 493 AGG-TGA----------- 498
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