Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02136 and BPUM_2765
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_02136___xkdH.1.24716.seq
# -bsequence dna-align/BPUM_2765___yqbH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02136___xkdH-BPUM_2765___yqbH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02136___xkdH-BPUM_2765___yqbH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02136___xkdH
# 2: BPUM_2765___yqbH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity: 223/409 (54.5%)
# Similarity: 223/409 (54.5%)
# Gaps: 104/409 (25.4%)
# Score: 545.0
#
#
#=======================================
BSNT_02136___ 1 ATGAGCTACAGGCAGATGCTCATTC-----------ATCGCTGCGACATT 39
|||||.|| |||.|| |.|||||.||..|.
BPUM_2765___y 1 ATGAGTTA-----------TCAATCTCTCTTAACAGACCGCTGTGATCTA 39
BSNT_02136___ 40 TATCA---TGAAGCAGCGCAAGCGCCGTCTGCAGG----CCG------AT 76
|.||| |||| |.||.|.||| ||| ||
BPUM_2765___y 40 TTTCACCTTGAA-------------CATCAGGAGGCTTCCCGAGGAAAAT 76
BSNT_02136___ 77 TTGGGATTCCGGCAGACAGGCTGCAGCCGGTGA--------------TTT 112
|.||||||| ||||.|.||| |||
BPUM_2765___y 77 TCGGGATTC--------------CAGCTGATGACTTACAAATGACTCTTT 112
BSNT_02136___ 113 CATATCCGGATAC----ACCCGATGAACAAGATGTCCCTTGTTATTTTAC 158
|.|||||.|||.| |.|| ||| .||||.|..||||||||.|.|.
BPUM_2765___y 113 CCTATCCTGATGCGCCTAGCC--TGA--CAGATCTGTCTTGTTATGTCAT 158
BSNT_02136___ 159 CGAAAAAACACAG-CAGCTGATTCAGGAGGAGCCGGATCAAACTG-TATA 206
.|||||.|..||| || ||..|.||.||.|||||..|| |.|.|| |.||
BPUM_2765___y 159 AGAAAAGAATCAGTCA-CTTGTGCAAGAAGAGCCAAAT-ACAGTGATTTA 206
BSNT_02136___ 207 TCATAGCTTTCTCGTCCATTTTCCGTTGTCAGCGGACATCCGCGTGAACG 256
|||...||.|||.||||||||.||.||..||...||.||.|||.||.|.|
BPUM_2765___y 207 TCAGTCCTATCTTGTCCATTTCCCTTTAGCAAGTGATATTCGCCTGCATG 256
BSNT_02136___ 257 ATAAAATCATTTG----GGAGAATCA--TAAATATATACTAAAGCTGCCG 300
|.|||||..|.|| ||.|..||| |||.| |..|||.|||.
BPUM_2765___y 257 ACAAAATGGTGTGGAACGGCGTCTCACTTAAGT------TGCAGCAGCCC 300
BSNT_02136___ 301 AAAAGGATCAGACATCAT--CATTGGGAGGTCGTCGCAGTCAGGGATGAA 348
||||...|.|.|.||||| |||| ||.||..|.|||||||||.|.|||
BPUM_2765___y 301 AAAATAGTGAAAAATCATCACATT--GAAGTGATGGCAGTCAGGAAGGAA 348
BSNT_02136___ 349 AGCCTATGA 357
|..||||||
BPUM_2765___y 349 AATCTATGA 357
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