Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02132 and BPUM_2768
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_02132___xkdF.1.24716.seq
# -bsequence dna-align/BPUM_2768___yqbD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02132___xkdF-BPUM_2768___yqbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02132___xkdF-BPUM_2768___yqbD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02132___xkdF
# 2: BPUM_2768___yqbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1168
# Identity: 573/1168 (49.1%)
# Similarity: 573/1168 (49.1%)
# Gaps: 419/1168 (35.9%)
# Score: 1286.5
#
#
#=======================================
BSNT_02132___ 1 GTGGCGCGAGAATTAAGAAATGCCAAAATCA-GC-TTTGTCAGTTATGTG 48
.||.|..|||||.|||.|||.||.|||||.| || |.|.|| .||.|||
BPUM_2768___y 1 ATGCCAAGAGAACTAAAAAACGCTAAAATTACGCATGTTTC--CTACGTG 48
BSNT_02132___ 49 GACAAGGCGGCTAACCAGACAG-AATTTTTCTTTACGAAGTC--AGCCAA 95
|||||.||.||.|||.||| || ||||.||.||.|.|||..| ||..||
BPUM_2768___y 49 GACAAAGCAGCGAACAAGA-AGAAATTCTTTTTGATGAAAGCAAAGAAAA 97
BSNT_02132___ 96 ACC--TCCGTCATTTGAAAAAAAGGTTCGGCTGT--TTACAAAAAGTGAG 141
|.| .|||.| |||.|||||.||||..| ||| |.||||| .|
BPUM_2768___y 98 AGCGGCCCGAC-TTTCAAAAAGAGGTCAG--TGTCCTGACAAA-----GG 139
BSNT_02132___ 142 CAG--GATGAACAAAAGCTCGTGTACGGAATCGTGTATGAGCCTGATGTT 189
||| ||||..||....|||||||||||..|||||||||||||..||...
BPUM_2768___y 140 CAGAAGATGCTCATCGCCTCGTGTACGGTGTCGTGTATGAGCCGAATACG 189
BSNT_02132___ 190 CCTGATGCCCACGGCGATTTTATGACCGCCGAGGAAATTGAAAAAGCGGC 239
||||||||.||....||.||||||||.||..||||||||||||.|||.||
BPUM_2768___y 190 CCTGATGCACATCAAGACTTTATGACAGCGAAGGAAATTGAAAGAGCAGC 239
BSNT_02132___ 240 GCACGGTTTTCTCGCGGAGGCACGGGAGATTGATATCAATCACAGC---- 285
||||||.|||.|...|||.||.||..|.||||| ||| .||||
BPUM_2768___y 240 GCACGGCTTTATGAAGGATGCCCGTCATATTGA---CAA--GCAGCATGA 284
BSNT_02132___ 286 -TTTGAGGGCGGAACCGGCGTCGTGGTCGAGTCCTATGTGGCGCCCGATG 334
|||.|||..||...|||||..|||||.||.||.|||.|.||.||.|.||
BPUM_2768___y 285 TTTTCAGGATGGTGTCGGCGAAGTGGTTGAATCATATATTGCCCCAGCTG 334
BSNT_02132___ 335 ATTTT---ATGATCGGATCAAAGCGGATTACAAAGGGCTCATGGGTACTC 381
|..|| .||..||| ..|||..|||..|||.||.||.|||||.||.
BPUM_2768___y 335 ACGTTGAAGTGGGCGG---GGAGCTCATTCGAAAAGGATCTTGGGTGCTT 381
BSNT_02132___ 382 GTGACAAGAGCGTCTGATGAGGTGTGGGAACAGAT----TAAGGCTGGA- 426
|||||||..||.||..|.|||.|.|||||.||.|| .||||| .|
BPUM_2768___y 382 GTGACAAAGGCCTCCCAAGAGATTTGGGATCAAATCCAAAAAGGC--CAC 429
BSNT_02132___ 427 ATTATCACCGGCTA--CAGCATGGCTGGCACTGCAGATGT-GT----ATG 469
||| ||.||||| || |||||.||.||.||.||..| || ||
BPUM_2768___y 430 ATT---ACAGGCTATTCA--ATGGCCGGAACGGCGGACATCGTCGCGAT- 473
BSNT_02132___ 470 AAGAAGAACCGGTCGAAAAAGCAGGGTTCTTTAGTGTAT-TCAAG---CA 515
|||||||| |||...|||| |.||| ||||| ||
BPUM_2768___y 474 -AGAAGAAC---------AAGATCGGTT------TCTATCTCAAGACACA 507
BSNT_02132___ 516 AATG----------------CTTGCTGACAAA---------ACAGGGAAG 540
|||| .|||.|||.||| | ||.
BPUM_2768___y 508 AATGAGAGAGGGCTTTTTTCTTTGTTGAAAAATTTCTTTTTA-----AAA 552
BSNT_02132___ 541 GAGACTGAAGAAATGAGAAAAGAAGACATGAAAGAATCA--TTCGAGCAT 588
||| |||| |.|.|| |||||..|.||.|| ||.||.|||
BPUM_2768___y 553 GAG---GAAG----GTGCAA-----ACATGTCACAACCATTTTGGAACAT 590
BSNT_02132___ 589 GCGCTTT--ACCCTCTGC--------------TCAAACG--GCT--TGA- 617
||| |||.||||| ||||..| ||| |||
BPUM_2768___y 591 ----TTTAGACCATCTGCTGGAAGCCTTACAGTCAAGTGATGCTGATGAG 636
BSNT_02132___ 618 GCGGATTGAAA----------AAAACA----------------CAG---- 637
||||| ||.|| |.|||| |||
BPUM_2768___y 637 GCGGA-TGTAAGAGCTTCCTTAGAACAGCTCATTCCAATCGTGCAGGACA 685
BSNT_02132___ 638 ------ACACGGAG---------------------GAAAAGCCGGAGCA- 659
|.||.||| ||||.||| ||||
BPUM_2768___y 686 TCCTGAAGACAGAGGATGTACTTCAAGCGATTGGTGAAAGGCC--AGCAG 733
BSNT_02132___ 660 ----------------------------GACGGGTGATG---ACGAGCGT 678
|||||.|.|.| |.|||| |
BPUM_2768___y 734 ATGTACAAAAAGAAGAGTCTGCTTTGACGACGGATCAAGTACAAGAGC-T 782
BSNT_02132___ 679 CTGAAAAAGC--------TCGTTGAAGACATGCTTGC--CCCGCTGATC- 717
| |||||||| .|.|.|||.||.| ||||| |..|||||||
BPUM_2768___y 783 C-GAAAAAGCAAAAAGGACCATCGAAAACGT-CTTGCAGCAGGCTGATCA 830
BSNT_02132___ 718 -------------------------GAAC-------------GCATCG-- 727
|||| || |||
BPUM_2768___y 831 ACAGGAAACAGAACAAACAGGGGAAGAACCTGTCCAAAAAGTGC-TCGAA 879
BSNT_02132___ 728 --AGGCTTTGGA----------ATTAGCGCGAGGCGCGTCT--------- 756
||.|.|||.| ||.|||.| |||
BPUM_2768___y 880 CAAGTCGTTGCACCAATTCGTCATCAGCTC--------TCTTCCTTAGAG 921
BSNT_02132___ 757 -AAGCAGACAGCGGA----------CGATACGG-----------GCGGCA 784
||.|||.||||.|| ||||.|.| ||.|||
BPUM_2768___y 922 AAATCAGCCAGCAGAGAAAAAGCAGCGATGCAGGAAGTGCTTCAGCAGCA 971
BSNT_02132___ 785 ----------------------ATACAGA-----------GCAAG----- 796
||.||.| |||||
BPUM_2768___y 972 GCTTTTGCCTATTTCAGAGCGTATTCACATGCTTGAAAAGGCAAGGGGCA 1021
BSNT_02132___ 797 --TCAAAA-AATCAATC--------------------------------- 810
|||||| ||.|||||
BPUM_2768___y 1022 TATCAAAACAAACAATCCACGATACACAAAACGACACGACAAAACCCATA 1071
BSNT_02132___ 811 TGGAGCGGACTGCTGTAA 828
|||...||..|.||.|||
BPUM_2768___y 1072 TGGGATGGCTTACTATAA 1089
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