Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02125 and BPUM_2773
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_02125___xtrA.1.24716.seq
# -bsequence dna-align/BPUM_2773___yqaO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02125___xtrA-BPUM_2773___yqaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02125___xtrA-BPUM_2773___yqaO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02125___xtrA
# 2: BPUM_2773___yqaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 240
# Identity: 119/240 (49.6%)
# Similarity: 119/240 (49.6%)
# Gaps: 66/240 (27.5%)
# Score: 290.0
#
#
#=======================================
BSNT_02125___ 1 -----------------ATGATTCATCCTAAAAAACTGCTGCATATCGAT 33
||.||||||.|.|.||||
BPUM_2773___y 1 ATGAACGAGCCAAAACAATTATTCATTCAAGAAAA--------------- 35
BSNT_02125___ 34 TCCATCACGCTTAAGAGCCAGCTGGAGGAAGGGAAAATCCGTGTCATTAT 83
||| .|||.||....||.||.||||...|||.|||||.|..|||||..|
BPUM_2773___y 36 -CCA-GACGTTTGTCGGCGAGATGGAAACAGGAAAAATTCAAGTCATCGT 83
BSNT_02125___ 84 TGTGGATGGCATCAAGCAAGAA--GCATGGATC--ACAGAAGCGCCCGAG 129
..|.|||||.| |.|.|.||| ||.| ||| |.|||.|.|||.||.
BPUM_2773___y 84 GTTAGATGGGA--ATGTAGGAACGGCTT--ATCAGATAGATGTGCCTGAA 129
BSNT_02125___ 130 CATGGAAAAACGCTCGTCGAAACAAGAAAGGGCGATCTTGCCCGTGTGGA 179
|||||||||||..|..|..||||...|||.||..||.||||..|.||.||
BPUM_2773___y 130 CATGGAAAAACCATTATACAAACGGCAAAAGGTCATTTTGCAAGAGTAGA 179
BSNT_02125___ 180 ------------ATTTGAAATCGGCTACAAATTAAATTAA 207
.|||.|||||.||||.
BPUM_2773___y 180 TCACGAGATTGGTTTTAAAATCAGCTAG------------ 207
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