Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04582 and BPUM_2783

See Amino acid alignment / Visit BSNT_04582 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:13
# Commandline: needle
#    -asequence dna-align/BSNT_04582___yubA.1.24716.seq
#    -bsequence dna-align/BPUM_2783___yubA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04582___yubA-BPUM_2783___yubA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04582___yubA-BPUM_2783___yubA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04582___yubA
# 2: BPUM_2783___yubA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1191
# Identity:     842/1191 (70.7%)
# Similarity:   842/1191 (70.7%)
# Gaps:          72/1191 ( 6.0%)
# Score: 2840.5
# 
#
#=======================================

BSNT_04582___      1 GTGGAGACGTTGCAAACATGGAGCGGCAGATTCAAGCGA----TTCTTCT     46
                     .||.|..|..||||||..||||||.|..||||.|   ||    ||.||||
BPUM_2783___y      1 ATGAATTCTATGCAAATGTGGAGCAGTCGATTTA---GAAAATTTTTTCT     47

BSNT_04582___     47 TGGACAATAAGTTTGTTTTATTTTTGCTTGTGCTGCTGCTGATTGGTTTA     96
                     | ||.||.|||||||||.|.|||||.||.||.|||||..|.||.||.||.
BPUM_2783___y     48 T-GATAACAAGTTTGTTCTCTTTTTACTCGTCCTGCTATTAATCGGATTG     96

BSNT_04582___     97 AATATTCTAGTATTTACAAAAACATCATTTATTTTCACCCCGATTATTGT    146
                     |||||.||.||.||.|..||||||||.|||||||||||.|||.|.|||||
BPUM_2783___y     97 AATATCCTTGTTTTCATGAAAACATCCTTTATTTTCACACCGCTCATTGT    146

BSNT_04582___    147 TCTTCTCAAAACGATATCACTT-CCGATTATTTTGACAGGCATTGTTTTT    195
                     .||..|||||||.|| |..||| |||||||||||.||.||..|.||.|.|
BPUM_2783___y    147 ACTCGTCAAAACCAT-TGCCTTACCGATTATTTTAACGGGGGTCGTGTAT    195

BSNT_04582___    196 TATCTGTTAAACCCGGTCGTCGATTTCCTTGAGAGAAGAAGAATAAGAAG    245
                     |||.|.|||||||||.|.|||.||||..|.|||||....|||.|.|.|.|
BPUM_2783___y    196 TATTTATTAAACCCGATTGTCAATTTGTTAGAGAGGTTTAGAGTGAAACG    245

BSNT_04582___    246 AATCTATTCTATATTGCTGCTATATCTATTG--GTTATCGGGCTGATCAC    293
                     .||||.|||.||.|||||  |.|||.|||||  .||||.||..||||.||
BPUM_2783___y    246 GATCTTTTCGATTTTGCT--TTTATATATTGTCATTATTGGCATGATTAC    293

BSNT_04582___    294 GATCACAATCGTGTCGATCATTCCCTTCTTAAAAGAACAAATTATGA---    340
                     ..|.||.||.|||||.||.|||||.||.|||.|||..|||||.||||   
BPUM_2783___y    294 AGTAACGATTGTGTCTATTATTCCGTTTTTACAAGCGCAAATGATGAGCC    343

BSNT_04582___    341 -GTTTAATCGACAACATCCCAAGATATGTGGATATCGTTGAAAATCAGAC    389
                      ||||.||    |||.|.||.|.||||||.||||..||.|||.||||||.
BPUM_2783___y    344 TGTTTCAT----AACCTACCGAAATATGTTGATACGGTAGAAGATCAGAT    389

BSNT_04582___    390 GAAACAGCTGATCGGCAGCAACTTCGTCAATCAGGCCCAGCAAACGACGA    439
                     .|.|||.||.|..||.|||||||||.|.|.|||.||.||..|||..|.||
BPUM_2783___y    390 TAGACAACTAACGGGAAGCAACTTCATTACTCAAGCGCAAAAAAACATGA    439

BSNT_04582___    440 ACATCAATATATCTGATCTCGCAA-CAAAG-GTTTCAGATCAGGCAGCGA    487
                     |..|.||..|.|||||..|.|.|| ||||| |  |||..|||.||..|||
BPUM_2783___y    440 ATTTTAACGTCTCTGAATTGGTAAGCAAAGCG--TCAAGTCAAGCGACGA    487

BSNT_04582___    488 CAATTGTGAACAGTACCTTTACCGGCGTTGGGA-ATT-TTATCGGCGCCC    535
                     .||||.||.|.|||||||||||.||.||.|||| ||| |||  ||.||.|
BPUM_2783___y    488 AAATTTTGGAAAGTACCTTTACAGGAGTGGGGACATTCTTA--GGGGCGC    535

BSNT_04582___    536 TGACTGAGATTATCATTTCAATCGTTACGGTTCCGTTTATCCTTTTCTAT    585
                     |.|||||.||.|||||.||.|||||.|||||||||||.||.||.||||||
BPUM_2783___y    536 TCACTGAAATCATCATCTCGATCGTGACGGTTCCGTTCATTCTGTTCTAT    585

BSNT_04582___    586 TTGTTAAAGGACGGAAAAAAATTGCCGGTCTACATACTGAAGTTTGTTCC    635
                     ||.|||||.||.||.||||||||.||.|.|||..|.|||||.|||.||||
BPUM_2783___y    586 TTATTAAAAGATGGCAAAAAATTACCTGACTATTTCCTGAAATTTATTCC    635

BSNT_04582___    636 GACGCAATTGAAAGAACAGACATACACA----GT-CTTAAGCGAAATGAA    680
                     ||...|.||.|.|||    |||||||||    || |||.| |||||||||
BPUM_2783___y    636 GAATAAGTTTAGAGA----ACATACACATATCGTGCTTCA-CGAAATGAA    680

BSNT_04582___    681 TCATCGGTTAAGCTCTTATATCAGAGGCCAGATCATTGTCAGCTTCTGTA    730
                     .|||||..|.|||||||||||....||.||||||||||||||||||||||
BPUM_2783___y    681 CCATCGCCTGAGCTCTTATATTCTTGGACAGATCATTGTCAGCTTCTGTA    730

BSNT_04582___    731 TCGG-GTTTTTGCTGTTTATCGGTTATTTGATTATCGGGCTGGATTATGC    779
                     |.|| ||..|| ||.||.||.||||||.|||||||.||.||.||||||||
BPUM_2783___y    731 TTGGTGTGCTT-CTTTTAATTGGTTATCTGATTATTGGACTTGATTATGC    779

BSNT_04582___    780 TTCATTGCTTGCAGTCATTGCGGCTTGCACAAGCATCGTTCCATATTTAG    829
                     .|...||||.||..||||||||||.||.|||||..|.||.||.||..|.|
BPUM_2783___y    780 GTTGCTGCTGGCCATCATTGCGGCATGTACAAGTGTGGTACCTTACCTTG    829

BSNT_04582___    830 GGCCAACGATTGCCATTACGCCTGCGATTATCATTGCCATAGTGACATCG    879
                     |.||.||||||||.|||||.||.||||||.|||||||..|.||||||||.
BPUM_2783___y    830 GTCCTACGATTGCGATTACACCAGCGATTGTCATTGCACTTGTGACATCA    879

BSNT_04582___    880 CCGCTCATGCTGCTTAAGCTGGTGATCGTTTGGACGATTGTTCAGCTGAT    929
                     ||..|.|||||..|.||.|||.|.||.||.|||||..|.||.|||||.||
BPUM_2783___y    880 CCAGTGATGCTTTTAAAACTGATCATTGTCTGGACAGTGGTACAGCTCAT    929

BSNT_04582___    930 TGAAGGGAAGCTGATCTCTCCGCAAATTATGGGAAAAAACCTTCACATCC    979
                     |||||||||..|.||.||.||.||..|||||||.|||||||||||.||||
BPUM_2783___y    930 TGAAGGGAAATTTATTTCACCTCAGGTTATGGGGAAAAACCTTCATATCC    979

BSNT_04582___    980 ATCCGATTACGATTATTTTTCTGCTGTTAACAGCCGGCAAGCTGTTCGGC   1029
                     |.|||||.||||||||.|||.|.||.||||||||.||.||..||||..||
BPUM_2783___y    980 ACCCGATCACGATTATCTTTGTTCTCTTAACAGCAGGTAAATTGTTTAGC   1029

BSNT_04582___   1030 GTTGTTGGAATCATTCTTGCGATTCCCGGC-TATGCGGTTGCC--AAAGT   1076
                     ||.||.||.||||||.|||||||| |||.| |||||.||  ||  ||.||
BPUM_2783___y   1030 GTAGTCGGCATCATTGTTGCGATT-CCGACATATGCCGT--CCTGAAGGT   1076

BSNT_04582___   1077 CATTACGACACATTTATTTGACTGGTTTAAAATGCGGTCACATTTATACG   1126
                     |||.|||||.||.||.|||||.|||||.||||||||.||..||||.||..
BPUM_2783___y   1077 CATCACGACCCACTTGTTTGATTGGTTCAAAATGCGATCCAATTTGTATA   1126

BSNT_04582___   1127 ATGAAGAAAAAAATGAAAATACGCCGGGGCATAAAGTGTGA   1167
                     |.||||||||...|.||                        
BPUM_2783___y   1127 AAGAAGAAAAGGTTTAA------------------------   1143


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