Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04616 and BPUM_2800

See Amino acid alignment / Visit BSNT_04616 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:20
# Commandline: needle
#    -asequence dna-align/BSNT_04616___yugN.1.24716.seq
#    -bsequence dna-align/BPUM_2800___yugN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04616___yugN-BPUM_2800___yugN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04616___yugN-BPUM_2800___yugN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04616___yugN
# 2: BPUM_2800___yugN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 456
# Identity:     266/456 (58.3%)
# Similarity:   266/456 (58.3%)
# Gaps:         105/456 (23.0%)
# Score: 693.0
# 
#
#=======================================

BSNT_04616___      1 ATGATACCAATACCTTCC----------GCGATAGATGGGCAGTCTTTTC     40
                     |||||.|...||||.|||          |.||.||.|...||  ||||.|
BPUM_2800___y      1 ATGATTCATGTACCATCCAGGCTGCCTGGTGAAAGCTTCTCA--CTTTAC     48

BSNT_04616___     41 TGCTTCAAGAACTGGA-ACAAGTGATGAAGCCGCTCGGTTATGTGATAAA     89
                       |.|..||||   || ||    ||||||||||||||||||||||||.||
BPUM_2800___y     49 --CATTTAGAA---GAGAC----GATGAAGCCGCTCGGTTATGTGATTAA     89

BSNT_04616___     90 CGGCGGCTGGGAATACGATCATGGCTACTTTGATTATAAAATTGATGATA    139
                     .||...||||||.|||||||||||.|||||||||||||||||||||.||.
BPUM_2800___y     90 TGGTAACTGGGATTACGATCATGGATACTTTGATTATAAAATTGATAATC    139

BSNT_04616___    140 GAGACGGCTATTTATTTTTAAGAATTCCCGTCAATGC-GGTACAGGGCAG    188
                     |.||.||||||...|||.|.|||.||||..|.|..|| |..|.|||.|||
BPUM_2800___y    140 GTGATGGCTATACTTTTCTCAGAGTTCCTTTTACAGCTGAAAAAGGCCAG    189

BSNT_04616___    189 TCTCGATGAACGAGGGGCGGCCGTCCGGA---TCGGAACGCCATTTATGC    235
                      ||||||.|.|.|||.|..|..||   ||   |.|||...||||||.| |
BPUM_2800___y    190 -CTCGATCAGCCAGGCGTTGTGGT---GAAACTGGGAGATCCATTTCT-C    234

BSNT_04616___    236 TGAGA-CAGGTGTTTCAGGCGGAT--GTT-GACGATCACGCCGAGGGAGG    281
                     |.|.| ||.||.|.|||   .|||  ||| ||.|||||.||     ||.|
BPUM_2800___y    235 TTAAAGCATGTCTATCA---AGATAAGTTAGATGATCATGC-----GATG    276

BSNT_04616___    282 GCCTTTCCAAT-------CACTGTTTAATCAATTTTCC--GAACC-----    317
                     |  ||...|||       ||...|||||.|||  ||||  |||||     
BPUM_2800___y    277 G--TTGGAAATGTTGGCGCATCCTTTAACCAA--TTCCAAGAACCAAAAG    322

BSNT_04616___    318 GGAAAGGCGG-GACG---------------CGGAAATTGATCCGGCATTT    351
                     .|||||..|| ||.|               |.||||||     |||.|| 
BPUM_2800___y    323 AGAAAGATGGAGATGTATCAAAAGCTTATACTGAAATT-----GGCTTT-    366

BSNT_04616___    352 TTGGATATCGGCGCCTCTCTCGTGAAAGAATTGGAGGATGTTCTG--TTA    399
                                    ||.|||||.||.|||||.||.||.|..|||  |||
BPUM_2800___y    367 ---------------TCACTCGTCAAGGAATTAGAAGACGCACTGCTTTA    401

BSNT_04616___    400 CACTAG    405
                     .     
BPUM_2800___y    402 A-----    402


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