Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04619 and BPUM_2802

See Amino acid alignment / Visit BSNT_04619 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:20
# Commandline: needle
#    -asequence dna-align/BSNT_04619___pgi.1.24716.seq
#    -bsequence dna-align/BPUM_2802___pgi.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04619___pgi-BPUM_2802___pgi.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04619___pgi-BPUM_2802___pgi.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04619___pgi
# 2: BPUM_2802___pgi
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1367
# Identity:    1070/1367 (78.3%)
# Similarity:  1070/1367 (78.3%)
# Gaps:          25/1367 ( 1.8%)
# Score: 4135.5
# 
#
#=======================================

BSNT_04619___      1 ATGACGCATGTACGCTTTGACTACTCAAAAGCGTTGACTTTC-TTCAACG     49
                     |||||.|||.|.|..||||||||||||||||||||..||||| ||||| |
BPUM_2802___p      1 ATGACACATATTCAATTTGACTACTCAAAAGCGTTACCTTTCTTTCAA-G     49

BSNT_04619___     50 AACATGAACTTACATATCTGCGGGACTTTGTAAAAACAGCACACCATAAT     99
                     |.|||||.|||||||||.|....||.|||||.||....||.||.||||||
BPUM_2802___p     50 AGCATGAGCTTACATATTTAAAAGATTTTGTGAAGGTGGCCCATCATAAT     99

BSNT_04619___    100 ATCCATGAAAAAACAGGCGCGGGCAGCGATTTTCTAGGCTGGGTGGACCT    149
                     ||.||||||.||||.||..|.|||||.||||.|.||||||||||||||.|
BPUM_2802___p    100 ATTCATGAACAAACGGGTACAGGCAGTGATTATTTAGGCTGGGTGGACTT    149

BSNT_04619___    150 CCCTGAA-CATTATGATAAAGAAGAATTCGCGCGCATCAAAAAAAGCGCG    198
                     .|| ||| ||.||||||...||||||||.||.|||||.||||||||.||.
BPUM_2802___p    150 ACC-GAAGCAATATGATCGCGAAGAATTTGCCCGCATTAAAAAAAGTGCA    198

BSNT_04619___    199 GAAAAAATCAAATCTGACTCTGATGTCTTGCTTGTTGTCGGCATTGGCGG    248
                     ||.|||||.|||||.||||||||||||||||||||||||||.||.|||||
BPUM_2802___p    199 GATAAAATTAAATCAGACTCTGATGTCTTGCTTGTTGTCGGAATCGGCGG    248

BSNT_04619___    249 TTCTTATCTAGGAGCGCGGGCAGCGATTGAAGCGCTGAATCACGCGTTTT    298
                     |||.|||||.||.||.||.||.|||||||||....||||.|||.|.||.|
BPUM_2802___p    249 TTCATATCTCGGCGCACGTGCGGCGATTGAATTTTTGAACCACTCTTTCT    298

BSNT_04619___    299 ATAACACTTTGCCAAAAGCAAAACGCGGCAATCCGCAAGTCATTTTTATC    348
                     |||||||..|||||||||..||||||...|.|||||||.||||.|||||.
BPUM_2802___p    299 ATAACACGCTGCCAAAAGGCAAACGCAAGACTCCGCAAATCATCTTTATT    348

BSNT_04619___    349 GGAAACAACATCAGTTCATCTTATATGAGAGACGTCATGGATCTTCTTGA    398
                     |||||||||||||||||.||||||.|.|.|||.||.||||||||..|.||
BPUM_2802___p    349 GGAAACAACATCAGTTCTTCTTATTTAACAGATGTGATGGATCTATTAGA    398

BSNT_04619___    399 AGATGTTGACTTCTCTATTAATGTGATTTCTAAATCAGGTACGACAACTG    448
                     |||||..||.|||||||||||.||.|||||.|||||.|||||.|||||.|
BPUM_2802___p    399 AGATGCAGATTTCTCTATTAACGTCATTTCAAAATCTGGTACAACAACAG    448

BSNT_04619___    449 AACCTGCAATCGCTTTCCGTATTTTCCGCAAGCTTCTTGAAGAGAAATAC    498
                     |.||.||.||.||.||||||||.||....|||||.|||...||.||||||
BPUM_2802___p    449 AGCCAGCGATTGCGTTCCGTATCTTTAAAAAGCTCCTTATTGAAAAATAC    498

BSNT_04619___    499 GGTAAAGAAGAAGCGAAAGCGCGGATTTATGCAACAACTGATAAAGAGCG    548
                     |||...||||||||||||...||.|||||||||||||||||.||||..||
BPUM_2802___p    499 GGTGCTGAAGAAGCGAAAAAACGTATTTATGCAACAACTGACAAAGCACG    548

BSNT_04619___    549 CGGCGCATTAAAAAC----GCTTTCTAAC-GAAGAAGGCTTCGAATCATT    593
                     |||.|||||.|||||    ||     ||| ||||||||||.|||||||||
BPUM_2802___p    549 CGGTGCATTGAAAACATTAGC-----AACAGAAGAAGGCTACGAATCATT    593

BSNT_04619___    594 CGTTATTCCTGACGATGTCGGCGGCCGTTATTCAGTTTTAACAGCTGTAG    643
                     ..|.||.|||||.|||||.||.||.||.||||||||.||||||||.||||
BPUM_2802___p    594 TATCATCCCTGATGATGTAGGTGGACGCTATTCAGTCTTAACAGCAGTAG    643

BSNT_04619___    644 GTCTCTTGCCGATTGCTGTCAGCGGCGTCAACATTGATGACATGATGAAA    693
                     ||||.||.||.||.|||||.|||||.|...||||||||.|.||||||.|.
BPUM_2802___p    644 GTCTATTACCAATCGCTGTGAGCGGTGCTGACATTGATCAGATGATGGAG    693

BSNT_04619___    694 GGCGCCCTGG---ATGCGAGCAAAGATTTTGCAACATCTGAACTGGAAGA    740
                     ||.||   ||   |.||.|||.||||.||.||..|||||||.||....||
BPUM_2802___p    694 GGTGC---GGCAAAAGCAAGCGAAGACTTCGCTTCATCTGAGCTTTCTGA    740

BSNT_04619___    741 TAACCCAGCATACCAATATGCGGTTGTTCGCAATGTCCTTTATAATAAGG    790
                     .||..|.||||||||||||||.||||||||.|||||||||||.|||||.|
BPUM_2802___p    741 AAATGCGGCATACCAATATGCTGTTGTTCGTAATGTCCTTTACAATAAAG    790

BSNT_04619___    791 GCAAAACAATTGAAATGCTCATCAACTACGAACCGGCGCTTCAATACTTT    840
                     |||.|||.|||||||||||.||.|||||.||.||.|.|||.|||||||||
BPUM_2802___p    791 GCAGAACGATTGAAATGCTGATTAACTATGAGCCTGGGCTACAATACTTT    840

BSNT_04619___    841 GCGGAATGGTGGAAGCAGCTGTTCGGAGAAAGCGAAGGGAAAGATGAGAA    890
                     ||.|||||||||||.||..|.|||||.|||||.||||||||||||||.||
BPUM_2802___p    841 GCTGAATGGTGGAAACAATTATTCGGTGAAAGTGAAGGGAAAGATGAAAA    890

BSNT_04619___    891 GGGCATTTATCCTTCTTCAGCGAACTATTCAACAGACCTTCATTCTTTAG    940
                     .||.|||||||||||.||.|||||||..||||||||.||||||||..|.|
BPUM_2802___p    891 AGGAATTTATCCTTCCTCTGCGAACTTCTCAACAGATCTTCATTCACTTG    940

BSNT_04619___    941 GCCAGTATGTACAAGAAGGCCGCAGAGATTTATTCGAAACGGTCCTGAAC    990
                     |.||.|||||.||||||||..|.|||||.||.||.|||||..||.||||.
BPUM_2802___p    941 GTCAATATGTCCAAGAAGGAAGAAGAGACTTGTTTGAAACAATCGTGAAT    990

BSNT_04619___    991 GTAGAGAAGCCTAAACATGAAC-TGACAATTGAGGAAGCGGATAACGATC   1039
                     |||||.||||||...||||||| ||.| |||||.|.||..||..|.||.|
BPUM_2802___p    991 GTAGACAAGCCTCGTCATGAACTTGTC-ATTGAAGCAGAAGAACAAGACC   1039

BSNT_04619___   1040 TTGACGGCTTGAACTATTTAGCCGGTAAAACTGTTGATTTCGTTAACAAG   1089
                     ||||.||||||||||||.||||.||.|||||.||||||||||||||.||.
BPUM_2802___p   1040 TTGATGGCTTGAACTATCTAGCAGGAAAAACGGTTGATTTCGTTAATAAA   1089

BSNT_04619___   1090 AAAGCATTCCAAGGCACGATGCTTGCCCATACAGACGGAAATGTTCCGAA   1139
                     ||||||||..||||.|||||||||||.||||||||.|||||.||.|||||
BPUM_2802___p   1090 AAAGCATTTGAAGGAACGATGCTTGCTCATACAGATGGAAAAGTACCGAA   1139

BSNT_04619___   1140 CTTAATCGTTAACATTCCTGAGCTAAATGCATATACTTTTGGATACCTTG   1189
                     ..|.|||||.|..|||||||||.|..||||.||||||||.|||||.||.|
BPUM_2802___p   1140 TCTGATCGTCACAATTCCTGAGATGGATGCTTATACTTTCGGATATCTCG   1189

BSNT_04619___   1190 TATATTTCTTCGAAAAAGCCTGCGCGATGAGCGGTTACCTCCTTGGCGTC   1239
                     |.||.|||||.||.|||||.|||||||||...||.||.||.||.||||||
BPUM_2802___p   1190 TTTACTTCTTTGAGAAAGCATGCGCGATGTCTGGATATCTACTAGGCGTC   1239

BSNT_04619___   1240 AATCCGTTTGACCAGCCTGGTGTAGAAGCGTATAAAGTCAATATGTTTGC   1289
                     |||||.||||||||.|||||.||||||||.||||||||.|||||||||||
BPUM_2802___p   1240 AATCCATTTGACCAACCTGGCGTAGAAGCTTATAAAGTGAATATGTTTGC   1289

BSNT_04619___   1290 GTTACTCGGCAAACCTGGCTTTGAAGAGAAAAAAGCAGAGCTTGAAAAAC   1339
                     .|||.|.||.|||||.|||||.||||||||||||||.||||||||||..|
BPUM_2802___p   1290 TTTATTAGGAAAACCAGGCTTCGAAGAGAAAAAAGCCGAGCTTGAAAGCC   1339

BSNT_04619___   1340 GTCTGGAAGA---TTAA   1353
                     |||||.||.|   .|||
BPUM_2802___p   1340 GTCTGAAACAATCGTAA   1356


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