Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04620 and BPUM_2803
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_04620___yugK.1.24716.seq
# -bsequence dna-align/BPUM_2803___yugK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04620___yugK-BPUM_2803___yugK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04620___yugK-BPUM_2803___yugK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04620___yugK
# 2: BPUM_2803___yugK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1190
# Identity: 896/1190 (75.3%)
# Similarity: 896/1190 (75.3%)
# Gaps: 34/1190 ( 2.9%)
# Score: 3214.0
#
#
#=======================================
BSNT_04620___ 1 ATGGAAAATTTCACTTATTATAATCCGACAAAGCTGATTTTTGGAAAAGG 50
|||||||||||.|.|||.||||||||.||.||..|.||.|||||||||||
BPUM_2803___y 1 ATGGAAAATTTTATTTACTATAATCCAACGAAATTAATGTTTGGAAAAGG 50
BSNT_04620___ 51 TCAGCTTGAACAATTAAGAAAA--GAATTCAAACGATACGGCAA--GAAT 96
.||.||.||||.|.| ||||| |||.||...||.||.||.|| ||.|
BPUM_2803___y 51 ACAACTAGAACGACT--GAAAAGCGAACTCGCTCGTTATGGAAAACGAGT 98
BSNT_04620___ 97 GTACTGCTTGTTTACGGGGGCGGCAGCATTAAACGCAACGGCCTTTATGA 146
|| |.|||||.||.||.||||||||||||||....||.||.||.|||||
BPUM_2803___y 99 GT--TACTTGTATATGGTGGCGGCAGCATTAAGAAAAATGGTCTATATGA 146
BSNT_04620___ 147 TCAAGTCA--CAGGCATTTTAAAAGAAGAGGGCGCTGTTGTTTATGAGCT 194
|.|.||.| |..||| |||||.||||..|..||||..||.|.|||.||
BPUM_2803___y 147 TAATGTGATTCGCGCA--TTAAATGAAGCAGAAGCTGAAGTATTTGAACT 194
BSNT_04620___ 195 GTCAGGTGTAGAGCCGAACCCGCGTCTTGCAACAGTGAAAAAAGGCATAG 244
||||||.||.||.||.||.|||||.||..|.||.|||||||||||.||.|
BPUM_2803___y 195 GTCAGGAGTTGAACCAAATCCGCGCCTCACTACGGTGAAAAAAGGAATCG 244
BSNT_04620___ 245 ACCTTTGCAGAGAGCATAACATTGATTTTCTGCTT-GCTGTCGGCGGAGG 293
||.|.|||..|.|..|.||.||||| |||||..|| |||||.|||||.||
BPUM_2803___y 245 ACATCTGCCAAAATGAAAATATTGA-TTTCTTATTAGCTGTTGGCGGCGG 293
BSNT_04620___ 294 CAGTGTGATTGACTGTACAAAGGCAATCGCAGCTGGCGTCA-AATACGAT 342
|||||||||||||||||||||.||.||.|||||.||.| || ||||||||
BPUM_2803___y 294 CAGTGTGATTGACTGTACAAAAGCGATTGCAGCCGGTG-CAGAATACGAT 342
BSNT_04620___ 343 GGCGACGCTTGGGATATTTTCAGCAAA-AAAGTAACAGCGGAGGATGCGC 391
||.||.|..|||||.|||.|| .|||| |||..|||.||..|..|.||..
BPUM_2803___y 343 GGAGATGTGTGGGACATTATC-TCAAAGAAAACAACCGCTCAAAAGGCAT 391
BSNT_04620___ 392 TGCCGTTTGGCACTGTTTTAACGCTTGCTGCAACAGGCTCTGAAATGAAC 441
|||||||||||||.||..|.||.|||||||||||.||.||.||||||||.
BPUM_2803___y 392 TGCCGTTTGGCACAGTGCTGACACTTGCTGCAACTGGTTCAGAAATGAAT 441
BSNT_04620___ 442 CCTGATTCCGTGATTACAAACTGGGAAACAAACGAGAAATTTGTATGGGG 491
||.||.||.||.||.|||||||||||||||||.||.||||.|||.|||||
BPUM_2803___y 442 CCAGACTCTGTCATCACAAACTGGGAAACAAATGAAAAATATGTGTGGGG 491
BSNT_04620___ 492 CAGCAATGTCACTCATCC-GCGTTTCTCTATTTTAGACCCTGAAAATACG 540
|||....||||||||||| || |||.||.||||||||||||||..|.|||
BPUM_2803___y 492 CAGTTCCGTCACTCATCCTGC-TTTTTCAATTTTAGACCCTGAGCACACG 540
BSNT_04620___ 541 --TTCACCGTTCCAGAAAATCAAACAGTATACGGCATGGTTGACATGATG 588
|||| ||.||||||||.||.||.||.|||||||||||.||.||||||
BPUM_2803___y 541 TATTCA--GTGCCAGAAAACCAGACGGTGTACGGCATGGTCGATATGATG 588
BSNT_04620___ 589 AGCCACGTATTCGAACAATACTTCCATAATGTTGAAAACACGCCGCTTCA 638
||||||||.|||||.||||||||||||||.||..||||||||||..|.||
BPUM_2803___y 589 AGCCACGTTTTCGAGCAATACTTCCATAAGGTCAAAAACACGCCTTTACA 638
BSNT_04620___ 639 GGATAGAATGTGCTTTGCTGTTTTGCAGACGGTCATCGAAACAGCTCCTA 688
||||.|.|||||.|||||||||.|.||.||.|||||.||.|||||.||.|
BPUM_2803___y 639 GGATCGGATGTGTTTTGCTGTTCTTCAAACAGTCATTGAGACAGCACCAA 688
BSNT_04620___ 689 AGCTTCTTGAAGATCTGGAAAACTACGAACTTCGTGAAACGATTTTGTAT 738
|.||.||.|||||..|..|||||||.||.|..|||||||||||..|.||.
BPUM_2803___y 689 AACTACTGGAAGACTTACAAAACTATGAGCACCGTGAAACGATCCTTTAC 738
BSNT_04620___ 739 GCTGGTACAATCGCTTTAAACGGCACGCTCCAAATGGGCTACTTTGGTGA 788
||.||.||.||.||||||||.||.|||||.||||||||.||||||||.||
BPUM_2803___y 739 GCAGGAACGATTGCTTTAAATGGTACGCTGCAAATGGGTTACTTTGGCGA 788
BSNT_04620___ 789 CTGGGCTTCTCATACAATGGAACACGCTGTTTCAGCTGTATATGATATTC 838
|||||.|||.|||||.||.||.||.||.||.||.|||||.|||||.||||
BPUM_2803___y 789 CTGGGTTTCCCATACGATTGAGCATGCAGTATCGGCTGTCTATGACATTC 838
BSNT_04620___ 839 CGCACGCGGGCGGTTTGGCGATACTGTTCCCAAACTGGATGAG--ATACA 886
||||.||.||||||.|.|||||.||.|||||||||||||||.| |||||
BPUM_2803___y 839 CGCATGCAGGCGGTCTTGCGATTCTCTTCCCAAACTGGATGCGTCATACA 888
BSNT_04620___ 887 CGCTTGATACA-AATGTAGGCCGTTTTAAAAACCTTATGCTCAACATGTT 935
||.||| || |||||.|..||.||||||||.||||||||.||||||||
BPUM_2803___y 889 --CTCGAT-CACAATGTGGAACGCTTTAAAAATCTTATGCTGAACATGTT 935
BSNT_04620___ 936 TGACATTGATACTGAAGGCAAAACAGATAAAGAAATTGCACTTGAAGGAA 985
||||||.||.||.|||||.|||.|.|||...||.||.|||.|.|||||||
BPUM_2803___y 936 TGACATCGAGACAGAAGGAAAATCTGATCGTGATATCGCATTAGAAGGAA 985
BSNT_04620___ 986 TCGATAAACTGTCTGCGTTCTGGACAAGCCTCGGTGCGCCTTCTCGTCTT 1035
||||.||.|||||.||.||||||||||||||||||||.||...||||||.
BPUM_2803___y 986 TCGACAAGCTGTCAGCCTTCTGGACAAGCCTCGGTGCACCAAGTCGTCTA 1035
BSNT_04620___ 1036 GCTGATTACAATATTGGAGAAGAAAAGCTTGAGCTGATTGCTGATATCGC 1085
||.|||||..|.|||||.|||||..||||.||....|||||.||.||.||
BPUM_2803___y 1036 GCGGATTATGACATTGGGGAAGATCAGCTGGACAAAATTGCCGACATTGC 1085
BSNT_04620___ 1086 AGCCAAGGAAATGGAACACGGCGGCTTCGGCAACTTCCAAAAACTGAACA 1135
.||.||.|||||||||.||||.||.||.||.|||||....|||||...|.
BPUM_2803___y 1086 GGCGAAAGAAATGGAATACGGTGGTTTTGGTAACTTTATGAAACTTGGCC 1135
BSNT_04620___ 1136 AAGATGACGTGCTTGCCATCCTTCG--CGCGTCTCTATAA 1173
..||||||.|.|||.|.|| ||.| .||.|||.|||||
BPUM_2803___y 1136 GTGATGACATTCTTTCTAT--TTTGAAAGCTTCTTTATAA 1173
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