Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04628 and BPUM_2809
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_04628___yugF.1.24716.seq
# -bsequence dna-align/BPUM_2809.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04628___yugF-BPUM_2809.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04628___yugF-BPUM_2809.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04628___yugF
# 2: BPUM_2809
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 903
# Identity: 534/903 (59.1%)
# Similarity: 534/903 (59.1%)
# Gaps: 159/903 (17.6%)
# Score: 1440.0
#
#
#=======================================
BSNT_04628___ 1 ------ATGGAGGCGGTTTCA-CCA------AT--------AAGGCGGTT 29
||.| |||| ||| || ||..|||||
BPUM_2809 1 GTGGACATTG-------TTCAGCCAGCTTATATGAAAAGTAAATTCGGTT 43
BSNT_04628___ 30 TACGGTCGATGGAGTCAATGTATACTACGAACATTATCAAAATCCCGGCA 79
| ||.|| |.||.|||||.||.||||.|||||..||.|
BPUM_2809 44 T-----------AGACA---TCTATTACGAGCACTATCCAAATCAGGGGA 79
BSNT_04628___ 80 GGCAAACGCTGGTCTGCGTACACGGTTTTTTATCATCTGCATTCAGCT-T 128
.|.||||..||.|||...|.||.|||.||||.||.|||.|.||||||| |
BPUM_2809 80 AGAAAACATTGATCTTAATTCATGGTCTTTTCTCTTCTACCTTCAGCTAT 129
BSNT_04628___ 129 CAGAAAAGTAATTCCTCTCCTTCGGGACAAGTACGACA---TCATCGCGC 175
| ||||..|.||.||.|| ||.|..||||| ||..|| |.|||||..
BPUM_2809 130 C-GAAAGCTCATCCCGCT--TTTGAAACAAG-ACTTCAATTTAATCGCAA 175
BSNT_04628___ 176 TTGATTTGCCTCCTTTCGGCCAATCTGAAAAATCAAGAACGTTTATCTAT 225
|.|||.||||.||.||.||.||.||.||.||.||.|..||||||||.||.
BPUM_2809 176 TCGATCTGCCGCCATTTGGACAGTCCGAGAAGTCGAATACGTTTATTTAC 225
BSNT_04628___ 226 ACCTATCAAAACCTTGCTAAGCTTGTCATTGGGATTTTGGAGC-----AC 270
|.|||||..|||.|.||.|||.|..||||||...| ||| |.
BPUM_2809 226 AGCTATCGCAACATGGCAAAGATCATCATTGAACT-----AGCTAGTTAT 270
BSNT_04628___ 271 TTGCAAGTGAAACAGGCTGTGCTTGTCGGGCATTCTATGGGCGGGCAGAT 320
|||||..|..|.||.||..|.||.||.||||||||.|||||.||.||.||
BPUM_2809 271 TTGCAGATTCAGCATGCGATCCTCGTGGGGCATTCCATGGGGGGACAAAT 320
BSNT_04628___ 321 ATCGCTGTCTGCTGCTCTCCAAAAACCTGAG---------CTTTTTTCAA 361
..|..|.|.|||||| |.||||| ||.|||..||
BPUM_2809 321 TGCTTTATATGCTGC---------ATCTGAGCGTCCCGACCTATTTGAAA 361
BSNT_04628___ 362 AGGTTGTGCTGCTTTGCAGTTCAGGGTAT-TTAAAACGTTCACACCCGAC 410
|.|..||.||..|.||||||||||||||| |.||.|.||.|| |...|.|
BPUM_2809 362 AAGCCGTTCTTTTATGCAGTTCAGGGTATATGAATAAGTCCA-AAAAGTC 410
BSNT_04628___ 411 GATCATTTTCGGGACCCATATCCCGTATTTTCATCTTTACATCAAACGCT 460
|.|..|||.|.|.||..||||.||.||||||.||||.||..|.|||
BPUM_2809 411 GCTTGTTTACAGCACATATATTCCTTATTTTTATCTCTATTTAAAA---- 456
BSNT_04628___ 461 GGCTCTCGAAAG----------AAGGCGTGATGAAAAATTTATTAAA--- 497
.||||| ||||..|.||||||||||| ||
BPUM_2809 457 ------AGAAAGTTGTTCAAGCAAGGTATTATGAAAAATTT----AACCG 496
BSNT_04628___ 498 -TGTGGTGCATGACAAATCGCTGATTGATGAGGAGATGATCGACGGCTA- 545
|||.||||||||..|.|||.|.||||||.|.||||||.|.|||||.||
BPUM_2809 497 CTGTTGTGCATGATCATTCGATTATTGATCAAGAGATGGTGGACGGATAT 546
BSNT_04628___ 546 TGGCAGACCATTTCAGGACGAGCAGATTTTCAAAGCCATGACAAGGTTT- 594
|...||.|..||||| ||.||.||.|||||||.||..|| |||
BPUM_2809 547 TTAAAGCCTTTTTCA-GATGACCAAATTTTCAGAGGTAT-------TTTT 588
BSNT_04628___ 595 ------ATCCGCCACAGAGAAGGAGATTTAGAACCCGAGCAATTGAAGAA 638
||.||.|||||.|||||.|||||||...|.||....||.|||||
BPUM_2809 589 CGTTTGATTCGGCACAGGGAAGGCGATTTAGCGTCGGATGTGTTAAAGAA 638
BSNT_04628___ 639 AATGAACAAGCCTGCTCTATTGATTTGGGGCGAGGAGGATCGAATTGTCC 688
||||.|.|..||||..||..||||||||||.|||||.||.||.||.||.|
BPUM_2809 639 AATGGAGACACCTGTCCTGCTGATTTGGGGGGAGGAAGACCGGATCGTTC 688
BSNT_04628___ 689 CAATGGAGATCGGTAAACGGCTGCACGCAGATTTGCCTAATTCCGTGCTG 738
|.||..|.||.||..||.|.||||||...|||.||||..||||
BPUM_2809 689 CTATTCAAATTGGCGAAAGACTGCACAAGGATCTGCCGCATTC------- 731
BSNT_04628___ 739 TAC---TCACTTGGC-------CAGACCGGACATCTGGTGCCTGAAGAA- 777
.|| |||| || .|.|||||.||.||..|.|||||.|||
BPUM_2809 732 AACCTTTCAC---GCATTAAAAAAAACCGGGCACCTCATCCCTGAGGAAA 778
BSNT_04628___ 778 ---CGGCCTGAACTTGTTTCTGAACACATTGCTGATTT-----TATCAAT 819
|||.|| ||||.|||||.||.||||...|||| |.|| |
BPUM_2809 779 ATCCGGTCT----TTGTGTCTGATCAAATTGGACATTTCAGTCTGTC--T 822
BSNT_04628___ 820 TAA 822
||.
BPUM_2809 823 TAG 825
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