Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04633 and BPUM_2811

See Amino acid alignment / Visit BSNT_04633 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_04633___patB.1.24716.seq
#    -bsequence dna-align/BPUM_2811.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04633___patB-BPUM_2811.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04633___patB-BPUM_2811.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04633___patB
# 2: BPUM_2811
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1271
# Identity:     775/1271 (61.0%)
# Similarity:   775/1271 (61.0%)
# Gaps:         202/1271 (15.9%)
# Score: 1944.0
# 
#
#=======================================

BSNT_04633___      1 ATGAACTTTGATAAACGAGAAGA-ACGCCTTGGCACCCAATCGGTCAAAT     49
                     |||||.||.||..||| |||..| |||....||..|..||||.||.||||
BPUM_2811          1 ATGAATTTCGACGAAC-AGATCATACGTAAAGGTTCAAAATCAGTGAAAT     49

BSNT_04633___     50 GGGACAAAACAGGCGAA----TTATTTGGCGT---GACAGACGCACTCCC     92
                     ||||..||.|||    |    |||||   |.|   .|||||.||.||.||
BPUM_2811         50 GGGATCAAGCAG----AGTCTTTATT---CCTTACAACAGATGCGCTGCC     92

BSNT_04633___     93 GATGTGGGTGGCGGATATGGATTTTCGCGCGCCAGAAGCA----ATAACT    138
                     .||||||||.||.||||||||||||...|||||    |||    .|...|
BPUM_2811         93 AATGTGGGTAGCAGATATGGATTTTAAAGCGCC----GCAGGTCGTCCTT    138

BSNT_04633___    139 GAAGCGTTAAAAGAGCGTCTTGACCACGGTATTTTTGGTTATACAACTCC    188
                     ||.||.||||||.||||..|.||.||||||.|.|||||.|||.|...||.
BPUM_2811        139 GATGCATTAAAAAAGCGATTGGATCACGGTGTATTTGGCTATGCTTTTCA    188

BSNT_04633___    189 AGATCAAAAAACGAGGGATGCTGTGTGC-GGATGGATGCAAAA-CAGGCA    236
                     ||||||..|.|||..|.|.||.|| .|| |.||||.| ||||| .|||||
BPUM_2811        189 AGATCAGGATACGCAGCAGGCAGT-AGCTGAATGGCT-CAAAAGAAGGCA    236

BSNT_04633___    237 CGGCTGGAAGGTGAATCCGGAAAG----CATCACATTCAGCCCCGGCGTT    282
                     |    |||.|||..||||.||.||    |.||||.||||..||.||..||
BPUM_2811        237 C----GGATGGTCGATCCAGACAGAAGCCGTCACCTTCACACCTGGGATT    282

BSNT_04633___    283 GTAACGGC-CTTGAGCATGGCGGTACAAGCTTTTACGGAGCCGGGCGATC    331
                     ||.||.|| ||| ||..|.||.||.|||||.|.|||.||.||..|.||..
BPUM_2811        283 GTCACTGCACTT-AGTTTTGCAGTCCAAGCCTATACAGAACCAAGTGACG    331

BSNT_04633___    332 AAGTAGTTGTTCAGCCTCCAGTTTATACGCCTTTTTACCATATGGTGGA-    380
                     ||||.||..|.|||.|.||.||.|||||.||||||||.||.|||.|.|| 
BPUM_2811        332 AAGTCGTCATACAGTCCCCTGTGTATACACCTTTTTATCAAATGATTGAA    381

BSNT_04633___    381 -GAAA--AACGGCCGG-------CACAT--TTTACATAATCCGCTGCTAG    418
                      ||||  ||||..|.|       || ||  ||||.|.|         |||
BPUM_2811        382 CGAAATGAACGAACAGTCTCAACCA-ATCCTTTAAAAA---------TAG    421

BSNT_04633___    419 AAGAAGACGGCGCATATGCAATGGATTTTGAAGATTTGGAGACGAAGCTT    468
                     ||.|..||.||   ||||..|||||||||||.|||||.||||..||..|.
BPUM_2811        422 AAAACAACCGC---TATGTGATGGATTTTGATGATTTAGAGAAAAAATTA    468

BSNT_04633___    469 AG-TGACC-CAAGCG----TTACATTGTTTATTTTATGCAATCCTCATAA    512
                     || .|||| .|||||    |.|   |||   |..|.||..||||.|||||
BPUM_2811        469 AGCAGACCAGAAGCGAAGCTCA---TGT---TCCTCTGTCATCCGCATAA    512

BSNT_04633___    513 CCCTTCTGGGCGTTCATGGGGCCGGGAAGATTTACTGAAGC---TAGGCG    559
                     .||.||.||..|..|||||......|||||.|||   ||||   ||||..
BPUM_2811        513 TCCGTCCGGAAGAGCATGGTCTAAAGAAGAATTA---AAGCGAGTAGGAA    559

BSNT_04633___    560 AATTGTGCCTTGAGCATGGCGTAACAGTTGTATCGGATGAAATCCATTCC    609
                     |..|.||..|..||||.||.||.|||||.||.||.|||||.||.|||||.
BPUM_2811        560 ACCTCTGTATCAAGCACGGTGTTACAGTCGTTTCAGATGAGATTCATTCT    609

BSNT_04633___    610 GATTTAATGCTGTACGGACACAAA----CACACGCCGTTCGCTTCGCTCT    655
                     |||||||||||.|||||    |||    ||...|||.||.|||...||.|
BPUM_2811        610 GATTTAATGCTATACGG----AAAGCCGCATGTGCCATTTGCTAGTCTTT    655

BSNT_04633___    656 CTGACGATTTCGCTGATATTTCTGTGACATGTGCTGCTCCAAGCAAAACA    705
                     ||||.||..|.||..||||..|.||||||||...|||.|||||.||||||
BPUM_2811        656 CTGATGACATAGCACATATCACAGTGACATGCATTGCACCAAGTAAAACA    705

BSNT_04633___    706 TTTAATATCGCCGGATTGCAGGCTTCAGCGATCATTATTCCGGATCGCCT    755
                     ||||||.|.||.||..|.||.||.|||||.||.||||||.|.||     |
BPUM_2811        706 TTTAATTTAGCTGGCCTCCAAGCATCAGCCATTATTATTTCCGA-----T    750

BSNT_04633___    756 GAAGCGCGCC----AAGTTTTCCGCAAGCCTT---------------CAG    786
                     ||||          |||        ||.||||               ||.
BPUM_2811        751 GAAG------AAAAAAG--------AACCCTTTTTAACAATGAAATGCAA    786

BSNT_04633___    787 CGCAATGGTTTAGGCGGAA-TGAACGCGTTTGCCGTCACTGCAATCGAAG    835
                     .|.||.||..| |||..|| ||||.||.|||||..|..||||.||.||||
BPUM_2811        787 AGAAACGGACT-GGCTAAACTGAATGCATTTGCGATTCCTGCGATGGAAG    835

BSNT_04633___    836 CCGCGTA--TTCAAAAGGCGGACCGTGGCTTGATG-AATTGATCACTTAC    882
                     |.||.||  ..||...||..||  ||||||.|||| |.|||.|| .|||.
BPUM_2811        836 CAGCATACCGCCATGGGGATGA--GTGGCTGGATGCACTTGTTC-TTTAT    882

BSNT_04633___    883 ATTGAGAAAAACATGAACGAAGCGGAA--GCCT-TTTTGA-GCACCGAGC    928
                     .|.||.||.||.|||||  ||..|.||  |.|| |.|||| |.||  |.|
BPUM_2811        883 CTCGAAAACAATATGAA--AATGGCAATGGACTATATTGATGAAC--ATC    928

BSNT_04633___    929 TGCCAAAGGTCAAAATG------ATGAAGCCGGATGCATCATACTTGATT    972
                     |.|||      ||.|||      |||||.||.|||||.||.|| ||.|||
BPUM_2811        929 TTCCA------AACATGCGTTATATGAAACCAGATGCTTCTTA-TTTATT    971

BSNT_04633___    973 -TGGCTCGAC-TTCAGCGCTTACGGCTTGTCCGATACAGAGCTCCAGC--   1018
                      |||.|.||| ||| |.|.|||        .|.||.|||   ||.|||  
BPUM_2811        972 ATGGATGGACATTC-GGGATTA--------TCAATTCAG---TCAAGCGG   1009

BSNT_04633___   1019 ------AAAGAA---TGCTAAAAAAAGGAAAAGTTATTTTAGAGCCCGG-   1058
                           ||.|.|   ||||.|||||.||.|||||.||..||||||..|| 
BPUM_2811       1010 AATTGAAACGCAATTTGCTCAAAAAGGGCAAAGTGATCCTAGAGCTTGGT   1059

BSNT_04633___   1059 GACGAAATACGGGCCTGGCGGAGAAGGATTTATGCGCCTGAA-CGCGGGA   1107
                     .||| ..||.||.|..|..|||||.||.|||||.||..|||| |.| ||.
BPUM_2811       1060 CACG-TGTATGGACTCGAGGGAGATGGCTTTATTCGGATGAATCTC-GGC   1107

BSNT_04633___   1108 TGCTCT-CTTGCAACCCTGCAGGACGGCCTG---CGCC-GCATCAAAGC-   1151
                     |||.|| ||| ||||..|..|.||.||..||   |||| .|||| |||| 
BPUM_2811       1108 TGCCCTGCTT-CAACAGTCAAAGAAGGATTGAAACGCCTTCATC-AAGCG   1155

BSNT_04633___   1152 ----CG-CATTATCGTAA---   1164
                         || |||.|||..||   
BPUM_2811       1156 TTTACGCCATCATCTGAATAA   1176


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