Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04638 and BPUM_2816

See Amino acid alignment / Visit BSNT_04638 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:22
# Commandline: needle
#    -asequence dna-align/BSNT_04638.1.24716.seq
#    -bsequence dna-align/BPUM_2816.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04638-BPUM_2816.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04638-BPUM_2816.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04638
# 2: BPUM_2816
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1267
# Identity:     692/1267 (54.6%)
# Similarity:   692/1267 (54.6%)
# Gaps:         287/1267 (22.7%)
# Score: 1812.5
# 
#
#=======================================

BSNT_04638         0 --------------------------------------------------      0
                                                                       
BPUM_2816          1 TTGTACATCATGTGGTTTGTGAACTTTTTTGTATCTGCCAGCATTACAAT     50

BSNT_04638         0 --------------------------------------------------      0
                                                                       
BPUM_2816         51 GATCGTCCCTTTTTTATCACTTTACATAGAATCTCTTGATAGCAGTTATT    100

BSNT_04638         1 --------------------------------GTGTTCGGCATTACATTT     18
                                                     ||.||.|||.|.||.|||
BPUM_2816        101 CAAATGAATTTGTCCAGAGATGGAGCGGTTATGTCTTTGGCGTCACGTTT    150

BSNT_04638        19 CTCATGGCGTTTTTGGTATCCCCGTTTTGGGGACGGTTCGGAGACAAACG     68
                     .|.|.|||.|||.|..|.||.|||.||||||||||..|.||||||...|.
BPUM_2816        151 TTAACGGCCTTTCTAATTTCTCCGATTTGGGGACGAATTGGAGACCGGCA    200

BSNT_04638        69 CGGATACAAGAAAA---TCCTTATGGCAACCGGAACGGGCATTGCCCTCA    115
                     .||.||.||.||.|   |.|||||        .|||||| ||||...| |
BPUM_2816        201 TGGCTATAAAAAGATTTTGCTTAT--------TAACGGG-ATTGGAAT-A    240

BSNT_04638       116 GC-------ATTTTCTTCATGGGCTTTGTTACATCGGTGTACCAATTGTT    158
                     ||       |||.|.||.|||||..||||...|.|.||.||.|||    .
BPUM_2816        241 GCGACAAGTATTCTATTAATGGGGCTTGTGCAAACTGTTTATCAA----C    286

BSNT_04638       159 TTTTCTGCGTATGGC----AATGGGTCTTGTAACCGGATTCATCCCGACA    204
                     |.|||..|.|..|||    .|||||.|||||.||.||.||.|||.||||.
BPUM_2816        287 TATTCGCCCTGAGGCTCTTTATGGGGCTTGTCACAGGCTTTATCTCGACT    336

BSNT_04638       205 TCTCTTGCGATGATTTCGGCACAGACTCCGAAGAGCTCA---GCCGGCAA    251
                     ||..|.||..|.||.||.|||||||   ||||.|...||   ||.||.||
BPUM_2816        337 TCAATGGCACTCATCTCTGCACAGA---CGAAAAAGGCAACTGCGGGTAA    383

BSNT_04638       252 AACGCTTGGCACGCTGCAAATGGGGCAAGTGTCCGGAAGCTTGTTCGGCC    301
                     |||.|||||.|||.||||.|||.|..|.||..|||||.|.|||||.||||
BPUM_2816        384 AACCCTTGGTACGATGCAGATGAGTAATGTTGCCGGAGGATTGTTTGGCC    433

BSNT_04638       302 CGCTTTTGGGAGG---CATGCTTGCTGATCGTTTCGGCTTTACGTATACC    348
                     |..|..||||.||   ||||   ||.||..|..||||.||||..|||||.
BPUM_2816        434 CATTAATGGGCGGATTCATG---GCAGACAGCGTCGGATTTATTTATACG    480

BSNT_04638       349 TTTTTTATCACATCCTTTGTAATTTTCTCGTCTGTTCTTCTCGTG-TTAT    397
                     |||||..|||||.|...|||.||||...||||.|...||   ||| ||||
BPUM_2816        481 TTTTTCCTCACAGCGGCTGTCATTTATGCGTCAGCCATT---GTGATTAT    527

BSNT_04638       398 TT--GGTGTCAAAGAAAAGCC--TC--TTGCAGAGAAAACAGCCAAACGT    441
                     ||  ||.||.||||||.||||  ||  ||..|.|||    |||.||.|| 
BPUM_2816        528 TTTCGGAGTGAAAGAACAGCCCATCCGTTCAAAAGA----AGCGAAGCG-    572

BSNT_04638       442 ACG--TCATACTCGAGAAAAGAAGTGCTC--TCCTATATTTTTCACCATC    487
                      ||  ||.||.||..|.||.|||||.|||  ||  |||||||..|.||.|
BPUM_2816        573 -CGTTTCTTATTCACGGAAGGAAGTACTCGTTC--ATATTTTCAAACAGC    619

BSNT_04638       488 CGGCGCT-GTGGGTCATGATGCTGTTAACCATGCTGATT---CAAACAGG    533
                     |...||| || .||.|.||||||.|||||   |.|.|||   |||..|||
BPUM_2816        620 CTTTGCTAGT-CGTTACGATGCTCTTAAC---GTTTATTACACAAGTAGG    665

BSNT_04638       534 CAATTTCAGTATCCAGCCCCTGCTCGCTTTATATGTAAATGAGCTGCACG    583
                     .||.||.||.||.|||||.||..|.||||||||..|..||||..|.||||
BPUM_2816        666 GAACTTTAGCATTCAGCCTCTTTTGGCTTTATACATTCATGATTTACACG    715

BSNT_04638       584 GACCTGTCAATCTTGCCTTTTTCTCCGGCATGGCATTTTCAGCAACGGGG    633
                     |.|||||.|||||.||.||||...|.||..|.||.||.||.|||||.||.
BPUM_2816        716 GCCCTGTTAATCTCGCATTTTATGCGGGTCTTGCGTTCTCTGCAACTGGA    765

BSNT_04638       634 CTCGGAAGTTTGCTGCTGGCTAGAAAATGGGGTGATCTGGGCGACCGCTA    683
                     ||.||.|.||||||..|..|..||||.|||||.|||||.||.||.||   
BPUM_2816        766 CTTGGCAATTTGCTCTTTACACGAAAGTGGGGAGATCTCGGAGATCG---    812

BSNT_04638       684 CGGCCACCGCCGCATTTTAATCGGAC---------TTTTGCTCGCC----    720
                                       |||.||.|         |..||||||||    
BPUM_2816        813 ------------------AATTGGTCATGACAAGGTGCTGCTCGCCCTTC    844

BSNT_04638       721 ---GCCTCT-TTCTTTTTTATT----CCGCAGGCGCTCGCG---TCCTCA    759
                        .||||| .|||.|||||||    |||||.||..|.|||   ||||  
BPUM_2816        845 TGATCCTCTCCTCTATTTTATTCATCCCGCAAGCAATGGCGGATTCCT--    892

BSNT_04638       760 CTCA-GCG-TGCTCCTTGTTTTCAGATTTTTATTCGGAATGGCGATGGGC    807
                        | ||| ||.|..|..|||||.|.|||.|||.|||.|||||..|.|||
BPUM_2816        893 ---ATGCGATGTTAGTCCTTTTCCGTTTTCTATACGGGATGGCACTCGGC    939

BSNT_04638       808 GGTTTGCTGCCATGCATTACGGCAGCGATCCGCGTTC-AGGCTCCCGGCA    856
                     ||..|..|.|||||.|..|||||....||.|| |.|| |.||.||.|.|.
BPUM_2816        940 GGGATTATCCCATGTACAACGGCGTATATTCG-GATCAAAGCGCCTGCCT    988

BSNT_04638       857 GCATTCAGGGTGAAGTTCTCGGCTACAATGTCAGCTTTCGCTTTTTAGGA    906
                     ..||.||.||.|||||.|||||.||||||||.|||||.||.|||.|.||.
BPUM_2816        989 CTATGCAAGGGGAAGTGCTCGGATACAATGTTAGCTTCCGTTTTCTTGGG   1038

BSNT_04638       907 AACGTGCTCGGGCCTCTGCTCGGGGGAATCATATCGAGCCATTTTAC--C    954
                     ||.||..||||.||..||.|.||.||.||..|..||||.||  ||||  .
BPUM_2816       1039 AATGTTGTCGGTCCGGTGATTGGTGGCATTGTCGCGAGTCA--TTACGGA   1086

BSNT_04638       955 ATTTCGGCCACCTTTTACGTCA----CGGCGTTTCTCTTTTTCGCCGGCG   1000
                     |||.|.||...||||||.||||    |||..|||.|||.|||.|      
BPUM_2816       1087 ATTCCAGCTGTCTTTTATGTCACCGCCGGAATTTTTCTGTTTGG------   1130

BSNT_04638      1001 CCTGCATGCTTTGGATCAT--GCAGAAACTTCGGAAAGATTCTTATGCCA   1048
                       .||||..|||   |.||  ||.|    ||||...|.|.||..|.||.|
BPUM_2816       1131 --AGCATTATTT---TTATGGGCGG----TTCGCTCACAGTCGAAGGCAA   1171

BSNT_04638      1049 AAGCAAG------CTGA   1059
                     |||.|||      ||||
BPUM_2816       1172 AAGAAAGGAGTGTCTGA   1188


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.